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Cluster: HRGMv2_2122_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2122_1 HRGMv2_2122_1_190 180235 181947 - GH13_36
TC HRGMv2_2122_1 HRGMv2_2122_1_191 182553 183431 - 3.A.1.1.27
TC HRGMv2_2122_1 HRGMv2_2122_1_192 183431 184813 - 3.A.1.1.27
pfam HRGMv2_2122_1 HRGMv2_2122_1_193 184944 186239 - SBP_bac_8
CAZyme HRGMv2_2122_1 HRGMv2_2122_1_194 186315 187766 - GH77
TF HRGMv2_2122_1 HRGMv2_2122_1_195 188103 189122 + LacI
CAZyme HRGMv2_2122_1 HRGMv2_2122_1_196 189493 191607 - CBM34 | GH13_39
Gene ID: HRGMv2_2122_1_190
Type: CAZyme
Location: 180235 - 181947 (-)
Gene ID: HRGMv2_2122_1_191
Type: TC
Location: 182553 - 183431 (-)
Gene ID: HRGMv2_2122_1_192
Type: TC
Location: 183431 - 184813 (-)
Gene ID: HRGMv2_2122_1_193
Type: pfam
Location: 184944 - 186239 (-)
Gene ID: HRGMv2_2122_1_194
Type: CAZyme
Location: 186315 - 187766 (-)
Gene ID: HRGMv2_2122_1_195
Type: TF
Location: 188103 - 189122 (+)
Gene ID: HRGMv2_2122_1_196
Type: CAZyme
Location: 189493 - 191607 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2122_1_193 vegetarian > vegan 1.04003 0.03201

🧭 Explore Read Mapping of CGC

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