Cluster: HRGMv2_2122_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_05927
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2122_27 | HRGMv2_2122_27_27 | 25211 | 26317 | - | 4.D.2.1.5 |
| NULL(UNKNOWN) | HRGMv2_2122_27 | HRGMv2_2122_27_28 | 26259 | 26810 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2122_27 | HRGMv2_2122_27_29 | 26844 | 27869 | - | GT2 |
| pfam | HRGMv2_2122_27 | HRGMv2_2122_27_30 | 28528 | 29754 | + | tRNA-synt_1b | S4 | SYY_C-terminal |
| pfam | HRGMv2_2122_27 | HRGMv2_2122_27_31 | 29858 | 30757 | - | PDDEXK_2 |
| TC | HRGMv2_2122_27 | HRGMv2_2122_27_32 | 31015 | 31806 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_2122_27_27
Type: TC
Location: 25211 - 26317 (-)
Type: TC
Location: 25211 - 26317 (-)
Gene ID: HRGMv2_2122_27_28
Type:
Location: 26259 - 26810 (-)
Type:
Location: 26259 - 26810 (-)
Gene ID: HRGMv2_2122_27_29
Type: CAZyme
Location: 26844 - 27869 (-)
Type: CAZyme
Location: 26844 - 27869 (-)
Gene ID: HRGMv2_2122_27_30
Type: pfam
Location: 28528 - 29754 (+)
Type: pfam
Location: 28528 - 29754 (+)
Gene ID: HRGMv2_2122_27_31
Type: pfam
Location: 29858 - 30757 (-)
Type: pfam
Location: 29858 - 30757 (-)
Gene ID: HRGMv2_2122_27_32
Type: TC
Location: 31015 - 31806 (-)
Type: TC
Location: 31015 - 31806 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.