Cluster: HRGMv2_2122_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_09966
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2122_2 | HRGMv2_2122_2_46 | 48066 | 48896 | + | CE4 |
| TC | HRGMv2_2122_2 | HRGMv2_2122_2_47 | 49207 | 49572 | + | 1.E.14.1.15 |
| TC | HRGMv2_2122_2 | HRGMv2_2122_2_48 | 49565 | 50257 | + | 2.A.122.1.4 |
Gene ID: HRGMv2_2122_2_46
Type: CAZyme
Location: 48066 - 48896 (+)
Type: CAZyme
Location: 48066 - 48896 (+)
Gene ID: HRGMv2_2122_2_47
Type: TC
Location: 49207 - 49572 (+)
Type: TC
Location: 49207 - 49572 (+)
Gene ID: HRGMv2_2122_2_48
Type: TC
Location: 49565 - 50257 (+)
Type: TC
Location: 49565 - 50257 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.