Cluster: HRGMv2_2122_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_01756
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2122_1 | HRGMv2_2122_1_41 | 36832 | 39630 | + | GT51 |
| TC | HRGMv2_2122_1 | HRGMv2_2122_1_42 | 39818 | 41074 | - | 1.A.11.2.7 |
| pfam | HRGMv2_2122_1 | HRGMv2_2122_1_43 | 41184 | 41522 | - | P-II |
| pfam | HRGMv2_2122_1 | HRGMv2_2122_1_44 | 41769 | 43898 | - | Gln-synt_C | GSIII_N | Gln-synt_C-ter |
| TC | HRGMv2_2122_1 | HRGMv2_2122_1_45 | 44188 | 47034 | - | 3.A.24.3.1 |
Gene ID: HRGMv2_2122_1_41
Type: CAZyme
Location: 36832 - 39630 (+)
Type: CAZyme
Location: 36832 - 39630 (+)
Gene ID: HRGMv2_2122_1_42
Type: TC
Location: 39818 - 41074 (-)
Type: TC
Location: 39818 - 41074 (-)
Gene ID: HRGMv2_2122_1_43
Type: pfam
Location: 41184 - 41522 (-)
Type: pfam
Location: 41184 - 41522 (-)
Gene ID: HRGMv2_2122_1_44
Type: pfam
Location: 41769 - 43898 (-)
Type: pfam
Location: 41769 - 43898 (-)
Gene ID: HRGMv2_2122_1_45
Type: TC
Location: 44188 - 47034 (-)
Type: TC
Location: 44188 - 47034 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2122_1_43 | vegetarian > omnivore | 1.77832 | 0.02650 |