Cluster: HRGMv2_2122_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2122_6 | HRGMv2_2122_6_27 | 32133 | 32396 | + | 4.A.2.1.19 |
| pfam | HRGMv2_2122_6 | HRGMv2_2122_6_28 | 32400 | 33275 | + | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_2122_6 | HRGMv2_2122_6_29 | 33287 | 34117 | + | GT2 |
| CAZyme | HRGMv2_2122_6 | HRGMv2_2122_6_30 | 34134 | 35075 | + | GT2 |
Gene ID: HRGMv2_2122_6_27
Type: TC
Location: 32133 - 32396 (+)
Type: TC
Location: 32133 - 32396 (+)
Gene ID: HRGMv2_2122_6_28
Type: pfam
Location: 32400 - 33275 (+)
Type: pfam
Location: 32400 - 33275 (+)
Gene ID: HRGMv2_2122_6_29
Type: CAZyme
Location: 33287 - 34117 (+)
Type: CAZyme
Location: 33287 - 34117 (+)
Gene ID: HRGMv2_2122_6_30
Type: CAZyme
Location: 34134 - 35075 (+)
Type: CAZyme
Location: 34134 - 35075 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.