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Cluster: HRGMv2_2122_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2122_19 HRGMv2_2122_19_21 24465 25799 + 2.A.86.1.8
pfam HRGMv2_2122_19 HRGMv2_2122_19_22 26004 28448 + TPR_6 | TPR_6 | TPR_8 | TPR_8
CAZyme HRGMv2_2122_19 HRGMv2_2122_19_23 28472 30379 + CBM48 | GH13_9
STP HRGMv2_2122_19 HRGMv2_2122_19_24 30633 32522 + Pyr_redox_2
TC HRGMv2_2122_19 HRGMv2_2122_19_25 32561 33940 + 4.A.1.2.5
TF HRGMv2_2122_19 HRGMv2_2122_19_26 34076 34933 + HTH_6
TC HRGMv2_2122_19 HRGMv2_2122_19_27 35012 35512 + 4.A.1.2.6
Gene ID: HRGMv2_2122_19_21
Type: TC
Location: 24465 - 25799 (+)
Gene ID: HRGMv2_2122_19_22
Type: pfam
Location: 26004 - 28448 (+)
Gene ID: HRGMv2_2122_19_23
Type: CAZyme
Location: 28472 - 30379 (+)
Gene ID: HRGMv2_2122_19_24
Type: STP
Location: 30633 - 32522 (+)
Gene ID: HRGMv2_2122_19_25
Type: TC
Location: 32561 - 33940 (+)
Gene ID: HRGMv2_2122_19_26
Type: TF
Location: 34076 - 34933 (+)
Gene ID: HRGMv2_2122_19_27
Type: TC
Location: 35012 - 35512 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2122_19_26 vegetarian > vegan 1.41934 0.03201

🧭 Explore Read Mapping of CGC

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