Cluster: HRGMv2_2122_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_00002
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2122_6 | HRGMv2_2122_6_86 | 107602 | 109245 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2122_6 | HRGMv2_2122_6_87 | 109327 | 109524 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2122_6 | HRGMv2_2122_6_88 | 109645 | 111051 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_2122_6 | HRGMv2_2122_6_89 | 111055 | 112503 | + | GT2 |
| CAZyme | HRGMv2_2122_6 | HRGMv2_2122_6_90 | 112507 | 113673 | + | GT4 |
| CAZyme | HRGMv2_2122_6 | HRGMv2_2122_6_91 | 113670 | 114374 | + | GT2 |
| pfam | HRGMv2_2122_6 | HRGMv2_2122_6_92 | 114477 | 115625 | + | LytR_cpsA_psr |
| NULL(UNKNOWN) | HRGMv2_2122_6 | HRGMv2_2122_6_93 | 115768 | 116829 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2122_6 | HRGMv2_2122_6_94 | 116826 | 118277 | + | 2.A.50.2.1 |
| CAZyme | HRGMv2_2122_6 | HRGMv2_2122_6_95 | 118258 | 119232 | - | GT2 |
Gene ID: HRGMv2_2122_6_86
Type: CAZyme
Location: 107602 - 109245 (+)
Type: CAZyme
Location: 107602 - 109245 (+)
Gene ID: HRGMv2_2122_6_87
Type:
Location: 109327 - 109524 (+)
Type:
Location: 109327 - 109524 (+)
Gene ID: HRGMv2_2122_6_88
Type: TC
Location: 109645 - 111051 (+)
Type: TC
Location: 109645 - 111051 (+)
Gene ID: HRGMv2_2122_6_89
Type: CAZyme
Location: 111055 - 112503 (+)
Type: CAZyme
Location: 111055 - 112503 (+)
Gene ID: HRGMv2_2122_6_90
Type: CAZyme
Location: 112507 - 113673 (+)
Type: CAZyme
Location: 112507 - 113673 (+)
Gene ID: HRGMv2_2122_6_91
Type: CAZyme
Location: 113670 - 114374 (+)
Type: CAZyme
Location: 113670 - 114374 (+)
Gene ID: HRGMv2_2122_6_92
Type: pfam
Location: 114477 - 115625 (+)
Type: pfam
Location: 114477 - 115625 (+)
Gene ID: HRGMv2_2122_6_93
Type:
Location: 115768 - 116829 (+)
Type:
Location: 115768 - 116829 (+)
Gene ID: HRGMv2_2122_6_94
Type: TC
Location: 116826 - 118277 (+)
Type: TC
Location: 116826 - 118277 (+)
Gene ID: HRGMv2_2122_6_95
Type: CAZyme
Location: 118258 - 119232 (-)
Type: CAZyme
Location: 118258 - 119232 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2122_6_87 | vegetarian > omnivore | 1.52972 | 0.02650 |
| HRGMv2_2122_6_87 | vegetarian > vegan | 2.26465 | 0.03201 |