Cluster: HRGMv2_2122_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_00203
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2122_8 | HRGMv2_2122_8_36 | 42581 | 43999 | - | GH13_18 |
| CAZyme | HRGMv2_2122_8 | HRGMv2_2122_8_37 | 43983 | 47117 | - | GH2 |
| TC | HRGMv2_2122_8 | HRGMv2_2122_8_38 | 47130 | 47945 | - | 3.A.1.1.4 |
| TC | HRGMv2_2122_8 | HRGMv2_2122_8_39 | 47942 | 48808 | - | 3.A.1.1.4 |
| TC | HRGMv2_2122_8 | HRGMv2_2122_8_40 | 48910 | 50226 | - | 3.A.1.1.4 |
Gene ID: HRGMv2_2122_8_36
Type: CAZyme
Location: 42581 - 43999 (-)
Type: CAZyme
Location: 42581 - 43999 (-)
Gene ID: HRGMv2_2122_8_37
Type: CAZyme
Location: 43983 - 47117 (-)
Type: CAZyme
Location: 43983 - 47117 (-)
Gene ID: HRGMv2_2122_8_38
Type: TC
Location: 47130 - 47945 (-)
Type: TC
Location: 47130 - 47945 (-)
Gene ID: HRGMv2_2122_8_39
Type: TC
Location: 47942 - 48808 (-)
Type: TC
Location: 47942 - 48808 (-)
Gene ID: HRGMv2_2122_8_40
Type: TC
Location: 48910 - 50226 (-)
Type: TC
Location: 48910 - 50226 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.