Cluster: HRGMv2_2122_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_00046
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2122_13 | HRGMv2_2122_13_23 | 18621 | 21095 | - | GT35 |
| pfam | HRGMv2_2122_13 | HRGMv2_2122_13_24 | 21184 | 24342 | - | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| pfam | HRGMv2_2122_13 | HRGMv2_2122_13_25 | 24988 | 26013 | - | Aminotran_4 |
| TC | HRGMv2_2122_13 | HRGMv2_2122_13_26 | 26134 | 27321 | - | 3.A.1.115.1 |
| TC | HRGMv2_2122_13 | HRGMv2_2122_13_27 | 27318 | 28094 | - | 3.A.1.128.6 |
Gene ID: HRGMv2_2122_13_23
Type: CAZyme
Location: 18621 - 21095 (-)
Type: CAZyme
Location: 18621 - 21095 (-)
Gene ID: HRGMv2_2122_13_24
Type: pfam
Location: 21184 - 24342 (-)
Type: pfam
Location: 21184 - 24342 (-)
Gene ID: HRGMv2_2122_13_25
Type: pfam
Location: 24988 - 26013 (-)
Type: pfam
Location: 24988 - 26013 (-)
Gene ID: HRGMv2_2122_13_26
Type: TC
Location: 26134 - 27321 (-)
Type: TC
Location: 26134 - 27321 (-)
Gene ID: HRGMv2_2122_13_27
Type: TC
Location: 27318 - 28094 (-)
Type: TC
Location: 27318 - 28094 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2122_13_27 | vegetarian > omnivore | 1.02920 | 0.02650 |
| HRGMv2_2122_13_27 | vegetarian > vegan | 1.17008 | 0.03201 |