Cluster: HRGMv2_2122_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_00012
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2122_7 | HRGMv2_2122_7_3 | 829 | 1146 | + | 4.A.3.1.2 |
| TC | HRGMv2_2122_7 | HRGMv2_2122_7_4 | 1148 | 1471 | + | 4.A.3.2.6 |
| TC | HRGMv2_2122_7 | HRGMv2_2122_7_5 | 1464 | 2723 | + | 4.A.3.2.2 |
| CAZyme | HRGMv2_2122_7 | HRGMv2_2122_7_6 | 2727 | 4136 | + | GH1 |
Gene ID: HRGMv2_2122_7_3
Type: TC
Location: 829 - 1146 (+)
Type: TC
Location: 829 - 1146 (+)
Gene ID: HRGMv2_2122_7_4
Type: TC
Location: 1148 - 1471 (+)
Type: TC
Location: 1148 - 1471 (+)
Gene ID: HRGMv2_2122_7_5
Type: TC
Location: 1464 - 2723 (+)
Type: TC
Location: 1464 - 2723 (+)
Gene ID: HRGMv2_2122_7_6
Type: CAZyme
Location: 2727 - 4136 (+)
Type: CAZyme
Location: 2727 - 4136 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.