Cluster: HRGMv2_2122_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_00047
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2122_16 | HRGMv2_2122_16_4 | 3364 | 4266 | - | 3.A.1.1.36 |
| TC | HRGMv2_2122_16 | HRGMv2_2122_16_5 | 4266 | 5225 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2122_16 | HRGMv2_2122_16_6 | 5353 | 6786 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2122_16 | HRGMv2_2122_16_7 | 6803 | 7843 | - | LacI |
| CAZyme | HRGMv2_2122_16 | HRGMv2_2122_16_8 | 8228 | 10672 | + | GH94 |
Gene ID: HRGMv2_2122_16_4
Type: TC
Location: 3364 - 4266 (-)
Type: TC
Location: 3364 - 4266 (-)
Gene ID: HRGMv2_2122_16_5
Type: TC
Location: 4266 - 5225 (-)
Type: TC
Location: 4266 - 5225 (-)
Gene ID: HRGMv2_2122_16_6
Type:
Location: 5353 - 6786 (-)
Type:
Location: 5353 - 6786 (-)
Gene ID: HRGMv2_2122_16_7
Type: TF
Location: 6803 - 7843 (-)
Type: TF
Location: 6803 - 7843 (-)
Gene ID: HRGMv2_2122_16_8
Type: CAZyme
Location: 8228 - 10672 (+)
Type: CAZyme
Location: 8228 - 10672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.