Genome Details
Selected Rep_genome_ID: HRGMv2_1905
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR062924 | 2,546,404 | 98.37% | 0.13% | China | Asia | CGMR |
| HRGMv2_1905 | 2,348,669 | 100% | 0.134% | Japan | Asia | HRGM |
| Rep_1232 | 2,339,347 | 96.9922% | 1.07817% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_1905_CGC16 | CGCFAM_00012 | Yes | 6 | 2 | host glycan/beta-glucan |
| HRGMv2_1905_CGC8 | CGCFAM_00066 | Yes | 3 | 2 | beta-mannan |
| HRGMv2_1905_CGC26 | CGCFAM_00100 | Yes | 13 | 1 | |
| HRGMv2_1905_CGC22 | CGCFAM_00115 | Yes | 3 | 1 | |
| HRGMv2_1905_CGC3 | CGCFAM_00130 | Yes | 4 | 1 | |
| HRGMv2_1905_CGC9 | CGCFAM_00503 | Yes | 3 | 1 | |
| HRGMv2_1905_CGC15 | CGCFAM_00853 | Yes | 5 | 2 | |
| HRGMv2_1905_CGC2 | CGCFAM_00931 | Yes | 3 | 1 | alpha-glucan |
| HRGMv2_1905_CGC10 | CGCFAM_02350 | Yes | 3 | 2 | |
| HRGMv2_1905_CGC21 | CGCFAM_02607 | Yes | 3 | 1 | |
| HRGMv2_1905_CGC19 | CGCFAM_02887 | Yes | 7 | 2 | |
| HRGMv2_1905_CGC20 | CGCFAM_02888 | Yes | 3 | 1 | |
| HRGMv2_1905_CGC17 | CGCFAM_02889 | Yes | 3 | 1 | |
| HRGMv2_1905_CGC14 | CGCFAM_09900 | Yes | 6 | 1 | |
| HRGMv2_1905_CGC31 | CGCFAM_09901 | Yes | 3 | 1 |
Top CAZyme Families