Cluster: HRGMv2_1905_CGC31
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1905
- CGC Family ID: CGCFAM_09901
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1905_39 | HRGMv2_1905_39_17 | 11519 | 12445 | - | 2.A.69.4.5 |
| pfam | HRGMv2_1905_39 | HRGMv2_1905_39_18 | 12449 | 12700 | - | FakA-like_M |
| CAZyme | HRGMv2_1905_39 | HRGMv2_1905_39_19 | 12703 | 14175 | - | GH1 |
Gene ID: HRGMv2_1905_39_17
Type: TC
Location: 11519 - 12445 (-)
Type: TC
Location: 11519 - 12445 (-)
Gene ID: HRGMv2_1905_39_18
Type: pfam
Location: 12449 - 12700 (-)
Type: pfam
Location: 12449 - 12700 (-)
Gene ID: HRGMv2_1905_39_19
Type: CAZyme
Location: 12703 - 14175 (-)
Type: CAZyme
Location: 12703 - 14175 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1905_39_18 | vegetarian > omnivore | 1.25563 | 0.02646 |
| HRGMv2_1905_39_18 | vegetarian > vegan | 2.33241 | 0.01786 |
| HRGMv2_1905_39_19 | vegan > omnivore | 1.63570 | 0.00396 |