Cluster: HRGMv2_1905_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_1905
- CGC Family ID: CGCFAM_00012
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1905_18 | HRGMv2_1905_18_20 | 18093 | 19460 | + | 2.A.66.1.32 |
| pfam | HRGMv2_1905_18 | HRGMv2_1905_18_21 | 19529 | 20197 | + | Amidase_3 |
| peptidase | HRGMv2_1905_18 | HRGMv2_1905_18_22 | 20727 | 21683 | + | C59.UPW |
| TC | HRGMv2_1905_18 | HRGMv2_1905_18_23 | 21828 | 23117 | + | 4.A.3.2.2 |
| CAZyme | HRGMv2_1905_18 | HRGMv2_1905_18_24 | 23161 | 23895 | + | CE1 |
| CAZyme | HRGMv2_1905_18 | HRGMv2_1905_18_25 | 23907 | 25373 | + | GH1 |
Gene ID: HRGMv2_1905_18_20
Type: TC
Location: 18093 - 19460 (+)
Type: TC
Location: 18093 - 19460 (+)
Gene ID: HRGMv2_1905_18_21
Type: pfam
Location: 19529 - 20197 (+)
Type: pfam
Location: 19529 - 20197 (+)
Gene ID: HRGMv2_1905_18_22
Type: peptidase
Location: 20727 - 21683 (+)
Type: peptidase
Location: 20727 - 21683 (+)
Gene ID: HRGMv2_1905_18_23
Type: TC
Location: 21828 - 23117 (+)
Type: TC
Location: 21828 - 23117 (+)
Gene ID: HRGMv2_1905_18_24
Type: CAZyme
Location: 23161 - 23895 (+)
Type: CAZyme
Location: 23161 - 23895 (+)
Gene ID: HRGMv2_1905_18_25
Type: CAZyme
Location: 23907 - 25373 (+)
Type: CAZyme
Location: 23907 - 25373 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.