Cluster: HRGMv2_1905_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1905
- CGC Family ID: CGCFAM_02887
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1905_19 | HRGMv2_1905_19_11 | 12044 | 13138 | - | GH170 |
| TC | HRGMv2_1905_19 | HRGMv2_1905_19_12 | 13135 | 14271 | - | 4.A.3.2.2 |
| STP | HRGMv2_1905_19 | HRGMv2_1905_19_13 | 14312 | 15214 | - | SIS |
| CAZyme | HRGMv2_1905_19 | HRGMv2_1905_19_14 | 15226 | 16260 | - | GH170 |
| STP | HRGMv2_1905_19 | HRGMv2_1905_19_15 | 16270 | 16941 | - | PIG-L |
| pfam | HRGMv2_1905_19 | HRGMv2_1905_19_16 | 16944 | 17888 | - | Acetyltransf_1 | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_7 |
| TC | HRGMv2_1905_19 | HRGMv2_1905_19_17 | 17894 | 19285 | - | 4.A.3.2.8 |
Gene ID: HRGMv2_1905_19_11
Type: CAZyme
Location: 12044 - 13138 (-)
Type: CAZyme
Location: 12044 - 13138 (-)
Gene ID: HRGMv2_1905_19_12
Type: TC
Location: 13135 - 14271 (-)
Type: TC
Location: 13135 - 14271 (-)
Gene ID: HRGMv2_1905_19_13
Type: STP
Location: 14312 - 15214 (-)
Type: STP
Location: 14312 - 15214 (-)
Gene ID: HRGMv2_1905_19_14
Type: CAZyme
Location: 15226 - 16260 (-)
Type: CAZyme
Location: 15226 - 16260 (-)
Gene ID: HRGMv2_1905_19_15
Type: STP
Location: 16270 - 16941 (-)
Type: STP
Location: 16270 - 16941 (-)
Gene ID: HRGMv2_1905_19_16
Type: pfam
Location: 16944 - 17888 (-)
Type: pfam
Location: 16944 - 17888 (-)
Gene ID: HRGMv2_1905_19_17
Type: TC
Location: 17894 - 19285 (-)
Type: TC
Location: 17894 - 19285 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.