Cluster: HRGMv2_1905_CGC17
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1905
- CGC Family ID: CGCFAM_02889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1905_18 | HRGMv2_1905_18_30 | 28772 | 29788 | + | 9.A.23.1.1 |
| pfam | HRGMv2_1905_18 | HRGMv2_1905_18_31 | 29821 | 31281 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | HRGMv2_1905_18 | HRGMv2_1905_18_32 | 31320 | 32714 | + | CE4 |
Gene ID: HRGMv2_1905_18_30
Type: TC
Location: 28772 - 29788 (+)
Type: TC
Location: 28772 - 29788 (+)
Gene ID: HRGMv2_1905_18_31
Type: pfam
Location: 29821 - 31281 (+)
Type: pfam
Location: 29821 - 31281 (+)
Gene ID: HRGMv2_1905_18_32
Type: CAZyme
Location: 31320 - 32714 (+)
Type: CAZyme
Location: 31320 - 32714 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.