Cluster: HRGMv2_1905_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1905
- CGC Family ID: CGCFAM_09900
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1905_16 | HRGMv2_1905_16_24 | 23606 | 25273 | + | GH13_31 |
| peptidase | HRGMv2_1905_16 | HRGMv2_1905_16_25 | 25376 | 26161 | + | M17.UPW |
| TC | HRGMv2_1905_16 | HRGMv2_1905_16_26 | 26202 | 28061 | - | 3.A.1.135.5 |
| TC | HRGMv2_1905_16 | HRGMv2_1905_16_27 | 28061 | 29785 | - | 3.A.1.135.5 |
| TF | HRGMv2_1905_16 | HRGMv2_1905_16_28 | 29796 | 30224 | - | MarR |
| TC | HRGMv2_1905_16 | HRGMv2_1905_16_29 | 30377 | 31489 | + | 9.B.10.1.1 |
Gene ID: HRGMv2_1905_16_24
Type: CAZyme
Location: 23606 - 25273 (+)
Type: CAZyme
Location: 23606 - 25273 (+)
Gene ID: HRGMv2_1905_16_25
Type: peptidase
Location: 25376 - 26161 (+)
Type: peptidase
Location: 25376 - 26161 (+)
Gene ID: HRGMv2_1905_16_26
Type: TC
Location: 26202 - 28061 (-)
Type: TC
Location: 26202 - 28061 (-)
Gene ID: HRGMv2_1905_16_27
Type: TC
Location: 28061 - 29785 (-)
Type: TC
Location: 28061 - 29785 (-)
Gene ID: HRGMv2_1905_16_28
Type: TF
Location: 29796 - 30224 (-)
Type: TF
Location: 29796 - 30224 (-)
Gene ID: HRGMv2_1905_16_29
Type: TC
Location: 30377 - 31489 (+)
Type: TC
Location: 30377 - 31489 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.