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Cluster: HRGMv2_1905_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1905_26 HRGMv2_1905_26_22 21170 21565 - 1.A.22.1.8
CAZyme HRGMv2_1905_26 HRGMv2_1905_26_23 21658 23088 - CE4
pfam HRGMv2_1905_26 HRGMv2_1905_26_24 23150 23929 - Amidase_3
NULL(UNKNOWN) HRGMv2_1905_26 HRGMv2_1905_26_25 23890 24006 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1905_26 HRGMv2_1905_26_26 24028 24336 - 4.A.3.2.9
pfam HRGMv2_1905_26 HRGMv2_1905_26_27 24424 24831 - ATP-synt_DE | ATP-synt_DE_N
TC HRGMv2_1905_26 HRGMv2_1905_26_28 24818 26224 - 3.A.2.1.5
TC HRGMv2_1905_26 HRGMv2_1905_26_29 26239 27087 - 3.A.2.1.5
TC HRGMv2_1905_26 HRGMv2_1905_26_30 27091 28614 - 3.A.2.1.5
TC HRGMv2_1905_26 HRGMv2_1905_26_31 28623 29153 - 3.A.2.1.5
pfam HRGMv2_1905_26 HRGMv2_1905_26_32 29153 29656 - ATP-synt_B
TC HRGMv2_1905_26 HRGMv2_1905_26_33 29694 29936 - 3.A.2.1.5
TC HRGMv2_1905_26 HRGMv2_1905_26_34 29994 30659 - 3.A.2.1.5
Gene ID: HRGMv2_1905_26_22
Type: TC
Location: 21170 - 21565 (-)
Gene ID: HRGMv2_1905_26_23
Type: CAZyme
Location: 21658 - 23088 (-)
Gene ID: HRGMv2_1905_26_24
Type: pfam
Location: 23150 - 23929 (-)
Gene ID: HRGMv2_1905_26_25
Type:
Location: 23890 - 24006 (-)
Gene ID: HRGMv2_1905_26_26
Type: TC
Location: 24028 - 24336 (-)
Gene ID: HRGMv2_1905_26_27
Type: pfam
Location: 24424 - 24831 (-)
Gene ID: HRGMv2_1905_26_28
Type: TC
Location: 24818 - 26224 (-)
Gene ID: HRGMv2_1905_26_29
Type: TC
Location: 26239 - 27087 (-)
Gene ID: HRGMv2_1905_26_30
Type: TC
Location: 27091 - 28614 (-)
Gene ID: HRGMv2_1905_26_31
Type: TC
Location: 28623 - 29153 (-)
Gene ID: HRGMv2_1905_26_32
Type: pfam
Location: 29153 - 29656 (-)
Gene ID: HRGMv2_1905_26_33
Type: TC
Location: 29694 - 29936 (-)
Gene ID: HRGMv2_1905_26_34
Type: TC
Location: 29994 - 30659 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1905_26_28 vegan > omnivore 1.41983 0.00396
HRGMv2_1905_26_28 vegetarian > omnivore 1.29282 0.02646

🧭 Explore Read Mapping of CGC

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