Cluster: HRGMv2_1905_CGC20
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1905
- CGC Family ID: CGCFAM_02888
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1905_20 | HRGMv2_1905_20_7 | 6699 | 7067 | - | 1.A.43.1.2 |
| pfam | HRGMv2_1905_20 | HRGMv2_1905_20_8 | 7060 | 8754 | - | Glycos_transf_4 |
| CAZyme | HRGMv2_1905_20 | HRGMv2_1905_20_9 | 8968 | 10119 | + | GH170 |
Gene ID: HRGMv2_1905_20_7
Type: TC
Location: 6699 - 7067 (-)
Type: TC
Location: 6699 - 7067 (-)
Gene ID: HRGMv2_1905_20_8
Type: pfam
Location: 7060 - 8754 (-)
Type: pfam
Location: 7060 - 8754 (-)
Gene ID: HRGMv2_1905_20_9
Type: CAZyme
Location: 8968 - 10119 (+)
Type: CAZyme
Location: 8968 - 10119 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1905_20_9 | vegan > omnivore | 3.30278 | 0.00396 |