Cluster: HRGMv2_1905_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1905
- CGC Family ID: CGCFAM_00853
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1905_18 | HRGMv2_1905_18_4 | 2933 | 3982 | + | GT2 |
| CAZyme | HRGMv2_1905_18 | HRGMv2_1905_18_5 | 3982 | 6186 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_1905_18 | HRGMv2_1905_18_6 | 6183 | 7946 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1905_18 | HRGMv2_1905_18_7 | 7951 | 8868 | + | HTH_1 |
| TC | HRGMv2_1905_18 | HRGMv2_1905_18_8 | 9014 | 9862 | + | 8.A.5.1.4 |
Gene ID: HRGMv2_1905_18_4
Type: CAZyme
Location: 2933 - 3982 (+)
Type: CAZyme
Location: 2933 - 3982 (+)
Gene ID: HRGMv2_1905_18_5
Type: CAZyme
Location: 3982 - 6186 (+)
Type: CAZyme
Location: 3982 - 6186 (+)
Gene ID: HRGMv2_1905_18_6
Type:
Location: 6183 - 7946 (+)
Type:
Location: 6183 - 7946 (+)
Gene ID: HRGMv2_1905_18_7
Type: TF
Location: 7951 - 8868 (+)
Type: TF
Location: 7951 - 8868 (+)
Gene ID: HRGMv2_1905_18_8
Type: TC
Location: 9014 - 9862 (+)
Type: TC
Location: 9014 - 9862 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.