dbCAN Logo

Genome Details

Selected Rep_genome_ID: HRGMv2_0319
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola sp900542985
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_0319 3,068,704 98.5% 0% South Korea Asia HRGM
Rep_518 2,891,879 97.7819% 0% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0319_CGC49 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0319_CGC55 CGCFAM_00003 Yes 12 5
HRGMv2_0319_CGC47 CGCFAM_00005 Yes 10 8
HRGMv2_0319_CGC4 CGCFAM_00016 Yes 6 1 host glycan
HRGMv2_0319_CGC21 CGCFAM_00025 Yes 11 3 pectin/alpha-glucan
HRGMv2_0319_CGC29 CGCFAM_00033 Yes 9 3
HRGMv2_0319_CGC40 CGCFAM_00048 Yes 10 2
HRGMv2_0319_CGC28 CGCFAM_00065 Yes 10 8
HRGMv2_0319_CGC2 CGCFAM_00082 Yes 9 5 beta-mannan
HRGMv2_0319_CGC15 CGCFAM_00113 Yes 4 1
HRGMv2_0319_CGC37 CGCFAM_00164 Yes 5 1
HRGMv2_0319_CGC25 CGCFAM_00170 Yes 8 4
HRGMv2_0319_CGC43 CGCFAM_00304 Yes 7 1
HRGMv2_0319_CGC31 CGCFAM_00363 Yes 6 1
HRGMv2_0319_CGC10 CGCFAM_00437 Yes 7 1
HRGMv2_0319_CGC50 CGCFAM_00479 Yes 8 4 host glycan
HRGMv2_0319_CGC51 CGCFAM_00536 Yes 5 2
HRGMv2_0319_CGC7 CGCFAM_00581 Yes 8 4
HRGMv2_0319_CGC24 CGCFAM_00873 Yes 8 1
HRGMv2_0319_CGC42 CGCFAM_00895 Yes 5 1
HRGMv2_0319_CGC23 CGCFAM_01889 Yes 6 2
HRGMv2_0319_CGC6 CGCFAM_05531 Yes 7 1
HRGMv2_0319_CGC19 CGCFAM_08662 Yes 3 1
HRGMv2_0319_CGC12 CGCFAM_09593 Yes 8 1
HRGMv2_0319_CGC20 CGCFAM_09595 Yes 4 1
Top CAZyme Families