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Cluster: HRGMv2_0319_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0319_3 HRGMv2_0319_3_81 95389 98031 - 1.B.14.6.14
pfam HRGMv2_0319_3 HRGMv2_0319_3_82 98265 98744 + PgpA
pfam HRGMv2_0319_3 HRGMv2_0319_3_83 98786 99265 + GtrA_DPMS_TM
TC HRGMv2_0319_3 HRGMv2_0319_3_84 99231 99914 + 4.F.1.3.2
pfam HRGMv2_0319_3 HRGMv2_0319_3_85 99924 100862 + PAP2_3
STP HRGMv2_0319_3 HRGMv2_0319_3_86 100942 101877 + PfkB
CAZyme HRGMv2_0319_3 HRGMv2_0319_3_87 101961 104618 - GH2
TC HRGMv2_0319_3 HRGMv2_0319_3_88 104799 106001 - 2.A.1.7.18
Gene ID: HRGMv2_0319_3_81
Type: TC
Location: 95389 - 98031 (-)
Gene ID: HRGMv2_0319_3_82
Type: pfam
Location: 98265 - 98744 (+)
Gene ID: HRGMv2_0319_3_83
Type: pfam
Location: 98786 - 99265 (+)
Gene ID: HRGMv2_0319_3_84
Type: TC
Location: 99231 - 99914 (+)
Gene ID: HRGMv2_0319_3_85
Type: pfam
Location: 99924 - 100862 (+)
Gene ID: HRGMv2_0319_3_86
Type: STP
Location: 100942 - 101877 (+)
Gene ID: HRGMv2_0319_3_87
Type: CAZyme
Location: 101961 - 104618 (-)
Gene ID: HRGMv2_0319_3_88
Type: TC
Location: 104799 - 106001 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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