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Cluster: HRGMv2_0319_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_75 74099 76663 + GH84
TF HRGMv2_0319_1 HRGMv2_0319_1_76 76966 80985 - HTH_AraC | HTH_AraC
TC HRGMv2_0319_1 HRGMv2_0319_1_77 81365 84523 + 1.B.14.6.2
TC HRGMv2_0319_1 HRGMv2_0319_1_78 84557 86260 + 8.A.46.2.2
NULL(UNKNOWN) HRGMv2_0319_1 HRGMv2_0319_1_79 86279 87625 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_80 87638 89266 + GH5_4
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_81 89289 90389 + GH5_38
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_82 90455 92812 + GH3
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_83 92822 95425 + GH3
Gene ID: HRGMv2_0319_1_75
Type: CAZyme
Location: 74099 - 76663 (+)
Gene ID: HRGMv2_0319_1_76
Type: TF
Location: 76966 - 80985 (-)
Gene ID: HRGMv2_0319_1_77
Type: TC
Location: 81365 - 84523 (+)
Gene ID: HRGMv2_0319_1_78
Type: TC
Location: 84557 - 86260 (+)
Gene ID: HRGMv2_0319_1_79
Type:
Location: 86279 - 87625 (+)
Gene ID: HRGMv2_0319_1_80
Type: CAZyme
Location: 87638 - 89266 (+)
Gene ID: HRGMv2_0319_1_81
Type: CAZyme
Location: 89289 - 90389 (+)
Gene ID: HRGMv2_0319_1_82
Type: CAZyme
Location: 90455 - 92812 (+)
Gene ID: HRGMv2_0319_1_83
Type: CAZyme
Location: 92822 - 95425 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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