Cluster: HRGMv2_0319_CGC55
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0319
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0319_26 | HRGMv2_0319_26_7 | 6133 | 7272 | + | GT4 |
| pfam | HRGMv2_0319_26 | HRGMv2_0319_26_8 | 7275 | 8420 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | HRGMv2_0319_26 | HRGMv2_0319_26_9 | 8433 | 9173 | + | Hexapep |
| TC | HRGMv2_0319_26 | HRGMv2_0319_26_10 | 9180 | 10616 | + | 2.A.66.2.16 |
| NULL(UNKNOWN) | HRGMv2_0319_26 | HRGMv2_0319_26_11 | 10629 | 11864 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0319_26 | HRGMv2_0319_26_12 | 11809 | 12747 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0319_26 | HRGMv2_0319_26_13 | 12713 | 13603 | + | GT14 |
| pfam | HRGMv2_0319_26 | HRGMv2_0319_26_14 | 13603 | 14745 | + | Glyco_trans_1_4 |
| CAZyme | HRGMv2_0319_26 | HRGMv2_0319_26_15 | 14954 | 16084 | + | GT4 |
| CAZyme | HRGMv2_0319_26 | HRGMv2_0319_26_16 | 16090 | 17184 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0319_26 | HRGMv2_0319_26_17 | 17192 | 17449 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0319_26 | HRGMv2_0319_26_18 | 17502 | 18224 | + | GT26 |
Gene ID: HRGMv2_0319_26_7
Type: CAZyme
Location: 6133 - 7272 (+)
Type: CAZyme
Location: 6133 - 7272 (+)
Gene ID: HRGMv2_0319_26_8
Type: pfam
Location: 7275 - 8420 (+)
Type: pfam
Location: 7275 - 8420 (+)
Gene ID: HRGMv2_0319_26_9
Type: pfam
Location: 8433 - 9173 (+)
Type: pfam
Location: 8433 - 9173 (+)
Gene ID: HRGMv2_0319_26_10
Type: TC
Location: 9180 - 10616 (+)
Type: TC
Location: 9180 - 10616 (+)
Gene ID: HRGMv2_0319_26_11
Type:
Location: 10629 - 11864 (+)
Type:
Location: 10629 - 11864 (+)
Gene ID: HRGMv2_0319_26_12
Type:
Location: 11809 - 12747 (+)
Type:
Location: 11809 - 12747 (+)
Gene ID: HRGMv2_0319_26_13
Type: CAZyme
Location: 12713 - 13603 (+)
Type: CAZyme
Location: 12713 - 13603 (+)
Gene ID: HRGMv2_0319_26_14
Type: pfam
Location: 13603 - 14745 (+)
Type: pfam
Location: 13603 - 14745 (+)
Gene ID: HRGMv2_0319_26_15
Type: CAZyme
Location: 14954 - 16084 (+)
Type: CAZyme
Location: 14954 - 16084 (+)
Gene ID: HRGMv2_0319_26_16
Type: CAZyme
Location: 16090 - 17184 (+)
Type: CAZyme
Location: 16090 - 17184 (+)
Gene ID: HRGMv2_0319_26_17
Type:
Location: 17192 - 17449 (-)
Type:
Location: 17192 - 17449 (-)
Gene ID: HRGMv2_0319_26_18
Type: CAZyme
Location: 17502 - 18224 (+)
Type: CAZyme
Location: 17502 - 18224 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900542985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.