Cluster: HRGMv2_0319_CGC31
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0319
- CGC Family ID: CGCFAM_00363
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0319_9 | HRGMv2_0319_9_42 | 51183 | 52646 | + | 2.A.35.1.6 |
| STP | HRGMv2_0319_9 | HRGMv2_0319_9_43 | 52902 | 55175 | + | HD |
| TF | HRGMv2_0319_9 | HRGMv2_0319_9_44 | 55263 | 55610 | - | MerR |
| TC | HRGMv2_0319_9 | HRGMv2_0319_9_45 | 55633 | 56601 | - | 1.A.34.1.3 |
| pfam | HRGMv2_0319_9 | HRGMv2_0319_9_46 | 56736 | 59354 | + | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| CAZyme | HRGMv2_0319_9 | HRGMv2_0319_9_47 | 59590 | 62082 | - | GH89 |
Gene ID: HRGMv2_0319_9_42
Type: TC
Location: 51183 - 52646 (+)
Type: TC
Location: 51183 - 52646 (+)
Gene ID: HRGMv2_0319_9_43
Type: STP
Location: 52902 - 55175 (+)
Type: STP
Location: 52902 - 55175 (+)
Gene ID: HRGMv2_0319_9_44
Type: TF
Location: 55263 - 55610 (-)
Type: TF
Location: 55263 - 55610 (-)
Gene ID: HRGMv2_0319_9_45
Type: TC
Location: 55633 - 56601 (-)
Type: TC
Location: 55633 - 56601 (-)
Gene ID: HRGMv2_0319_9_46
Type: pfam
Location: 56736 - 59354 (+)
Type: pfam
Location: 56736 - 59354 (+)
Gene ID: HRGMv2_0319_9_47
Type: CAZyme
Location: 59590 - 62082 (-)
Type: CAZyme
Location: 59590 - 62082 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900542985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0319_9_43 | vegetarian > omnivore | 1.15544 | 0.02695 |