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Cluster: HRGMv2_0319_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0319_20 HRGMv2_0319_20_20 32077 35148 + 1.B.14.6.13
TC HRGMv2_0319_20 HRGMv2_0319_20_21 35166 36713 + 8.A.46.2.1
CAZyme HRGMv2_0319_20 HRGMv2_0319_20_22 36733 37875 + GH18
pfam HRGMv2_0319_20 HRGMv2_0319_20_23 37883 39109 + BT_3987-like_N | Laminin_G_3
pfam HRGMv2_0319_20 HRGMv2_0319_20_24 39172 40119 + F5_F8_type_C | DUF4999 | F5_F8_type_C_2
CAZyme HRGMv2_0319_20 HRGMv2_0319_20_25 40319 42640 + GH20
CAZyme HRGMv2_0319_20 HRGMv2_0319_20_26 42808 45000 + GH163
CAZyme HRGMv2_0319_20 HRGMv2_0319_20_27 45367 47559 + GH163
Gene ID: HRGMv2_0319_20_20
Type: TC
Location: 32077 - 35148 (+)
Gene ID: HRGMv2_0319_20_21
Type: TC
Location: 35166 - 36713 (+)
Gene ID: HRGMv2_0319_20_22
Type: CAZyme
Location: 36733 - 37875 (+)
Gene ID: HRGMv2_0319_20_23
Type: pfam
Location: 37883 - 39109 (+)
Gene ID: HRGMv2_0319_20_24
Type: pfam
Location: 39172 - 40119 (+)
Gene ID: HRGMv2_0319_20_25
Type: CAZyme
Location: 40319 - 42640 (+)
Gene ID: HRGMv2_0319_20_26
Type: CAZyme
Location: 42808 - 45000 (+)
Gene ID: HRGMv2_0319_20_27
Type: CAZyme
Location: 45367 - 47559 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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