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Genome Details

Selected Rep_genome_ID: Rep_512
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
Rep_512 3,817,366 94.5419% 0.870647% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_512_CGC19 CGCFAM_00001 Yes 6 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_512_CGC30 CGCFAM_00001 Yes 4 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_512_CGC4 CGCFAM_00001 Yes 6 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_512_CGC6 CGCFAM_00001 Yes 8 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_512_CGC20 CGCFAM_00016 Yes 9 1 host glycan
Rep_512_CGC34 CGCFAM_00016 Yes 9 3 host glycan
Rep_512_CGC11 CGCFAM_00017 Yes 4 2 fructan
Rep_512_CGC16 CGCFAM_00025 Yes 10 5 pectin/alpha-glucan
Rep_512_CGC24 CGCFAM_00038 Yes 11 8
Rep_512_CGC23 CGCFAM_00061 Yes 6 2
Rep_512_CGC33 CGCFAM_00095 Yes 10 5
Rep_512_CGC1 CGCFAM_00108 Yes 13 7 pectin
Rep_512_CGC49 CGCFAM_00116 Yes 10 3 xylan/beta-glucan
Rep_512_CGC22 CGCFAM_00151 Yes 8 4
Rep_512_CGC2 CGCFAM_00164 Yes 5 3
Rep_512_CGC46 CGCFAM_00296 Yes 13 4
Rep_512_CGC26 CGCFAM_00331 Yes 10 4 alginate
Rep_512_CGC51 CGCFAM_00341 Yes 4 1
Rep_512_CGC50 CGCFAM_00372 Yes 11 5
Rep_512_CGC52 CGCFAM_01403 Yes 9 1
Rep_512_CGC44 CGCFAM_02717 Yes 9 5
Rep_512_CGC40 CGCFAM_02865 Yes 11 1
Rep_512_CGC14 CGCFAM_03097 Yes 3 1
Rep_512_CGC47 CGCFAM_04749 Yes 4 1
Rep_512_CGC9 CGCFAM_06741 Yes 17 8
Top CAZyme Families