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Cluster: Rep_512_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_512_c_93 Rep_512_c_93_13 17947 18924 + GH23
CAZyme Rep_512_c_93 Rep_512_c_93_14 18973 22083 + GH2
NULL(UNKNOWN) Rep_512_c_93 Rep_512_c_93_15 22302 22391 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_512_c_93 Rep_512_c_93_16 22511 25720 + 1.B.14.6.1
TC Rep_512_c_93 Rep_512_c_93_17 25747 27570 + 8.A.46.1.3
pfam Rep_512_c_93 Rep_512_c_93_18 27599 28666 + DUF5017
pfam Rep_512_c_93 Rep_512_c_93_19 28685 30661 + DUF4988
CAZyme Rep_512_c_93 Rep_512_c_93_20 30674 33214 + PL29
CAZyme Rep_512_c_93 Rep_512_c_93_21 33241 35532 + PL29
CAZyme Rep_512_c_93 Rep_512_c_93_22 35551 37968 + PL8_2
Gene ID: Rep_512_c_93_13
Type: CAZyme
Location: 17947 - 18924 (+)
Gene ID: Rep_512_c_93_14
Type: CAZyme
Location: 18973 - 22083 (+)
Gene ID: Rep_512_c_93_15
Type:
Location: 22302 - 22391 (+)
Gene ID: Rep_512_c_93_16
Type: TC
Location: 22511 - 25720 (+)
Gene ID: Rep_512_c_93_17
Type: TC
Location: 25747 - 27570 (+)
Gene ID: Rep_512_c_93_18
Type: pfam
Location: 27599 - 28666 (+)
Gene ID: Rep_512_c_93_19
Type: pfam
Location: 28685 - 30661 (+)
Gene ID: Rep_512_c_93_20
Type: CAZyme
Location: 30674 - 33214 (+)
Gene ID: Rep_512_c_93_21
Type: CAZyme
Location: 33241 - 35532 (+)
Gene ID: Rep_512_c_93_22
Type: CAZyme
Location: 35551 - 37968 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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