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Cluster: Rep_512_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_512_c_166 Rep_512_c_166_19 20794 22248 - 2.A.21.9.1
pfam Rep_512_c_166 Rep_512_c_166_20 22260 23387 - KdpD
TC Rep_512_c_166 Rep_512_c_166_21 23403 24908 - 2.A.38.1.1
TC Rep_512_c_166 Rep_512_c_166_22 25089 25676 - 3.A.3.7.2
TC Rep_512_c_166 Rep_512_c_166_23 25696 27732 - 3.A.3.7.2
TC Rep_512_c_166 Rep_512_c_166_24 27753 29459 - 3.A.3.7.2
NULL(UNKNOWN) Rep_512_c_166 Rep_512_c_166_25 29607 29705 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_512_c_166 Rep_512_c_166_26 30118 30276 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_512_c_166 Rep_512_c_166_27 30376 34110 - GH2 | GH2
Gene ID: Rep_512_c_166_19
Type: TC
Location: 20794 - 22248 (-)
Gene ID: Rep_512_c_166_20
Type: pfam
Location: 22260 - 23387 (-)
Gene ID: Rep_512_c_166_21
Type: TC
Location: 23403 - 24908 (-)
Gene ID: Rep_512_c_166_22
Type: TC
Location: 25089 - 25676 (-)
Gene ID: Rep_512_c_166_23
Type: TC
Location: 25696 - 27732 (-)
Gene ID: Rep_512_c_166_24
Type: TC
Location: 27753 - 29459 (-)
Gene ID: Rep_512_c_166_25
Type:
Location: 29607 - 29705 (-)
Gene ID: Rep_512_c_166_26
Type:
Location: 30118 - 30276 (-)
Gene ID: Rep_512_c_166_27
Type: CAZyme
Location: 30376 - 34110 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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