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Cluster: Rep_512_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_512_c_10 Rep_512_c_10_25 29627 32662 - GH92
pfam Rep_512_c_10 Rep_512_c_10_26 32683 34647 - SusD_RagB | SusD-like_3
TC Rep_512_c_10 Rep_512_c_10_27 34659 37961 - 1.B.14.6.1
CAZyme Rep_512_c_10 Rep_512_c_10_28 38015 40294 - GH20
TF Rep_512_c_10 Rep_512_c_10_29 40596 43487 - HTH_AraC
NULL(UNKNOWN) Rep_512_c_10 Rep_512_c_10_30 43456 43563 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_512_c_10 Rep_512_c_10_31 43799 46120 + GH92
TC Rep_512_c_10 Rep_512_c_10_32 46160 46834 - 9.B.20.1.4
Gene ID: Rep_512_c_10_25
Type: CAZyme
Location: 29627 - 32662 (-)
Gene ID: Rep_512_c_10_26
Type: pfam
Location: 32683 - 34647 (-)
Gene ID: Rep_512_c_10_27
Type: TC
Location: 34659 - 37961 (-)
Gene ID: Rep_512_c_10_28
Type: CAZyme
Location: 38015 - 40294 (-)
Gene ID: Rep_512_c_10_29
Type: TF
Location: 40596 - 43487 (-)
Gene ID: Rep_512_c_10_30
Type:
Location: 43456 - 43563 (-)
Gene ID: Rep_512_c_10_31
Type: CAZyme
Location: 43799 - 46120 (+)
Gene ID: Rep_512_c_10_32
Type: TC
Location: 46160 - 46834 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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