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Cluster: Rep_512_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_512_c_54 Rep_512_c_54_19 25091 26668 - 8.A.46.2.2
TC Rep_512_c_54 Rep_512_c_54_20 26697 29768 - 1.B.14.6.13
NULL(UNKNOWN) Rep_512_c_54 Rep_512_c_54_21 29787 31265 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_512_c_54 Rep_512_c_54_22 31873 32904 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_512_c_54 Rep_512_c_54_23 32925 34385 - GH18
pfam Rep_512_c_54 Rep_512_c_54_24 34403 35581 - Pentaxin | BT_3987-like_N | Laminin_G_3
pfam Rep_512_c_54 Rep_512_c_54_25 35597 36628 - GH18_BT1044-like
TC Rep_512_c_54 Rep_512_c_54_26 36640 38235 - 8.A.46.2.2
TC Rep_512_c_54 Rep_512_c_54_27 38248 41655 - 1.B.14.6.13
Gene ID: Rep_512_c_54_19
Type: TC
Location: 25091 - 26668 (-)
Gene ID: Rep_512_c_54_20
Type: TC
Location: 26697 - 29768 (-)
Gene ID: Rep_512_c_54_21
Type:
Location: 29787 - 31265 (-)
Gene ID: Rep_512_c_54_22
Type:
Location: 31873 - 32904 (-)
Gene ID: Rep_512_c_54_23
Type: CAZyme
Location: 32925 - 34385 (-)
Gene ID: Rep_512_c_54_24
Type: pfam
Location: 34403 - 35581 (-)
Gene ID: Rep_512_c_54_25
Type: pfam
Location: 35597 - 36628 (-)
Gene ID: Rep_512_c_54_26
Type: TC
Location: 36640 - 38235 (-)
Gene ID: Rep_512_c_54_27
Type: TC
Location: 38248 - 41655 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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