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Cluster: Rep_512_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_512_c_156 Rep_512_c_156_1 405 3593 + 1.B.14.6.1
pfam Rep_512_c_156 Rep_512_c_156_2 3604 5475 + SusD_RagB | SusD-like_3
TC Rep_512_c_156 Rep_512_c_156_3 5502 8327 + 1.B.14.6.1
pfam Rep_512_c_156 Rep_512_c_156_4 8341 10098 + SusD_RagB | SusD-like_3
pfam Rep_512_c_156 Rep_512_c_156_5 10135 11178 + BT_3987-like_N | DUF5627
CAZyme Rep_512_c_156 Rep_512_c_156_6 11209 13389 + GH10
CAZyme Rep_512_c_156 Rep_512_c_156_7 13470 15101 + GH30_8
CAZyme Rep_512_c_156 Rep_512_c_156_8 15194 17725 + GH115
STP Rep_512_c_156 Rep_512_c_156_9 17729 20230 - HATPase_c | HisKA | Response_reg
TC Rep_512_c_156 Rep_512_c_156_10 20297 21637 - 2.A.66.1.28
Gene ID: Rep_512_c_156_1
Type: TC
Location: 405 - 3593 (+)
Gene ID: Rep_512_c_156_2
Type: pfam
Location: 3604 - 5475 (+)
Gene ID: Rep_512_c_156_3
Type: TC
Location: 5502 - 8327 (+)
Gene ID: Rep_512_c_156_4
Type: pfam
Location: 8341 - 10098 (+)
Gene ID: Rep_512_c_156_5
Type: pfam
Location: 10135 - 11178 (+)
Gene ID: Rep_512_c_156_6
Type: CAZyme
Location: 11209 - 13389 (+)
Gene ID: Rep_512_c_156_7
Type: CAZyme
Location: 13470 - 15101 (+)
Gene ID: Rep_512_c_156_8
Type: CAZyme
Location: 15194 - 17725 (+)
Gene ID: Rep_512_c_156_9
Type: STP
Location: 17729 - 20230 (-)
Gene ID: Rep_512_c_156_10
Type: TC
Location: 20297 - 21637 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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