Cluster: Rep_512_CGC9
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_512
- CGC Family ID: CGCFAM_06741
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_512_c_16 | Rep_512_c_16_6 | 5079 | 6212 | - | GT19 |
| pfam | Rep_512_c_16 | Rep_512_c_16_7 | 6224 | 7000 | - | SurE |
| TC | Rep_512_c_16 | Rep_512_c_16_8 | 7271 | 8038 | + | 8.A.3.2.3 |
| pfam | Rep_512_c_16 | Rep_512_c_16_9 | 8043 | 8927 | + | ParBc | HTH_ParB | ParB_dimer |
| pfam | Rep_512_c_16 | Rep_512_c_16_10 | 8939 | 9715 | + | DUF5683 |
| CAZyme | Rep_512_c_16 | Rep_512_c_16_11 | 9719 | 10957 | + | GH23 |
| STP | Rep_512_c_16 | Rep_512_c_16_12 | 11063 | 13336 | + | HD |
| TF | Rep_512_c_16 | Rep_512_c_16_13 | 13333 | 13680 | - | MerR |
| TC | Rep_512_c_16 | Rep_512_c_16_14 | 13702 | 14670 | - | 1.A.34.1.3 |
| pfam | Rep_512_c_16 | Rep_512_c_16_15 | 14803 | 17424 | + | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| CAZyme | Rep_512_c_16 | Rep_512_c_16_16 | 17524 | 18513 | - | GH43_29 |
| CAZyme | Rep_512_c_16 | Rep_512_c_16_17 | 18567 | 19877 | - | GH43_2 |
| CAZyme | Rep_512_c_16 | Rep_512_c_16_18 | 20029 | 22047 | - | GH67 |
| CAZyme | Rep_512_c_16 | Rep_512_c_16_19 | 22055 | 23053 | - | GH43_1 |
| CAZyme | Rep_512_c_16 | Rep_512_c_16_20 | 23206 | 24321 | - | GH10 |
| TC | Rep_512_c_16 | Rep_512_c_16_21 | 24375 | 25868 | - | 2.A.2.3.4 |
| CAZyme | Rep_512_c_16 | Rep_512_c_16_22 | 25920 | 27542 | - | CE20 | CE20 |
Gene ID: Rep_512_c_16_6
Type: CAZyme
Location: 5079 - 6212 (-)
Type: CAZyme
Location: 5079 - 6212 (-)
Gene ID: Rep_512_c_16_7
Type: pfam
Location: 6224 - 7000 (-)
Type: pfam
Location: 6224 - 7000 (-)
Gene ID: Rep_512_c_16_8
Type: TC
Location: 7271 - 8038 (+)
Type: TC
Location: 7271 - 8038 (+)
Gene ID: Rep_512_c_16_9
Type: pfam
Location: 8043 - 8927 (+)
Type: pfam
Location: 8043 - 8927 (+)
Gene ID: Rep_512_c_16_10
Type: pfam
Location: 8939 - 9715 (+)
Type: pfam
Location: 8939 - 9715 (+)
Gene ID: Rep_512_c_16_11
Type: CAZyme
Location: 9719 - 10957 (+)
Type: CAZyme
Location: 9719 - 10957 (+)
Gene ID: Rep_512_c_16_12
Type: STP
Location: 11063 - 13336 (+)
Type: STP
Location: 11063 - 13336 (+)
Gene ID: Rep_512_c_16_13
Type: TF
Location: 13333 - 13680 (-)
Type: TF
Location: 13333 - 13680 (-)
Gene ID: Rep_512_c_16_14
Type: TC
Location: 13702 - 14670 (-)
Type: TC
Location: 13702 - 14670 (-)
Gene ID: Rep_512_c_16_15
Type: pfam
Location: 14803 - 17424 (+)
Type: pfam
Location: 14803 - 17424 (+)
Gene ID: Rep_512_c_16_16
Type: CAZyme
Location: 17524 - 18513 (-)
Type: CAZyme
Location: 17524 - 18513 (-)
Gene ID: Rep_512_c_16_17
Type: CAZyme
Location: 18567 - 19877 (-)
Type: CAZyme
Location: 18567 - 19877 (-)
Gene ID: Rep_512_c_16_18
Type: CAZyme
Location: 20029 - 22047 (-)
Type: CAZyme
Location: 20029 - 22047 (-)
Gene ID: Rep_512_c_16_19
Type: CAZyme
Location: 22055 - 23053 (-)
Type: CAZyme
Location: 22055 - 23053 (-)
Gene ID: Rep_512_c_16_20
Type: CAZyme
Location: 23206 - 24321 (-)
Type: CAZyme
Location: 23206 - 24321 (-)
Gene ID: Rep_512_c_16_21
Type: TC
Location: 24375 - 25868 (-)
Type: TC
Location: 24375 - 25868 (-)
Gene ID: Rep_512_c_16_22
Type: CAZyme
Location: 25920 - 27542 (-)
Type: CAZyme
Location: 25920 - 27542 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.