Cluster: Rep_512_CGC46
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_512
- CGC Family ID: CGCFAM_00296
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_512_c_127 | Rep_512_c_127_10 | 10931 | 11866 | - | 1.B.48.1.5 |
| NULL(UNKNOWN) | Rep_512_c_127 | Rep_512_c_127_11 | 12338 | 12457 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_512_c_127 | Rep_512_c_127_12 | 12521 | 15538 | + | 1.B.14.6.1 |
| pfam | Rep_512_c_127 | Rep_512_c_127_13 | 15563 | 17239 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_512_c_127 | Rep_512_c_127_14 | 17389 | 19677 | + | GH92 |
| NULL(UNKNOWN) | Rep_512_c_127 | Rep_512_c_127_15 | 19689 | 20222 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_512_c_127 | Rep_512_c_127_16 | 20285 | 21532 | - | His_Phos_2 |
| CAZyme | Rep_512_c_127 | Rep_512_c_127_17 | 21558 | 22964 | - | GH28 |
| CAZyme | Rep_512_c_127 | Rep_512_c_127_18 | 22990 | 25323 | - | GH92 |
| pfam | Rep_512_c_127 | Rep_512_c_127_19 | 25320 | 26405 | - | HGSNAT_cat |
| CAZyme | Rep_512_c_127 | Rep_512_c_127_20 | 26440 | 28608 | - | GH89 |
| TF | Rep_512_c_127 | Rep_512_c_127_21 | 28704 | 32897 | - | HTH_AraC |
| TC | Rep_512_c_127 | Rep_512_c_127_22 | 33504 | 35429 | + | 3.A.24.1.1 |
Gene ID: Rep_512_c_127_10
Type: TC
Location: 10931 - 11866 (-)
Type: TC
Location: 10931 - 11866 (-)
Gene ID: Rep_512_c_127_11
Type:
Location: 12338 - 12457 (-)
Type:
Location: 12338 - 12457 (-)
Gene ID: Rep_512_c_127_12
Type: TC
Location: 12521 - 15538 (+)
Type: TC
Location: 12521 - 15538 (+)
Gene ID: Rep_512_c_127_13
Type: pfam
Location: 15563 - 17239 (+)
Type: pfam
Location: 15563 - 17239 (+)
Gene ID: Rep_512_c_127_14
Type: CAZyme
Location: 17389 - 19677 (+)
Type: CAZyme
Location: 17389 - 19677 (+)
Gene ID: Rep_512_c_127_15
Type:
Location: 19689 - 20222 (+)
Type:
Location: 19689 - 20222 (+)
Gene ID: Rep_512_c_127_16
Type: pfam
Location: 20285 - 21532 (-)
Type: pfam
Location: 20285 - 21532 (-)
Gene ID: Rep_512_c_127_17
Type: CAZyme
Location: 21558 - 22964 (-)
Type: CAZyme
Location: 21558 - 22964 (-)
Gene ID: Rep_512_c_127_18
Type: CAZyme
Location: 22990 - 25323 (-)
Type: CAZyme
Location: 22990 - 25323 (-)
Gene ID: Rep_512_c_127_19
Type: pfam
Location: 25320 - 26405 (-)
Type: pfam
Location: 25320 - 26405 (-)
Gene ID: Rep_512_c_127_20
Type: CAZyme
Location: 26440 - 28608 (-)
Type: CAZyme
Location: 26440 - 28608 (-)
Gene ID: Rep_512_c_127_21
Type: TF
Location: 28704 - 32897 (-)
Type: TF
Location: 28704 - 32897 (-)
Gene ID: Rep_512_c_127_22
Type: TC
Location: 33504 - 35429 (+)
Type: TC
Location: 33504 - 35429 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.