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Cluster: Rep_512_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_512_c_43 Rep_512_c_43_52 66376 67740 - 2.A.2.6.2
pfam Rep_512_c_43 Rep_512_c_43_53 67795 69390 - DUF6377
CAZyme Rep_512_c_43 Rep_512_c_43_54 69629 71479 + GH13_46
CAZyme Rep_512_c_43 Rep_512_c_43_55 71667 73847 + GH97
TC Rep_512_c_43 Rep_512_c_43_56 74030 77092 + 1.B.14.6.1
TC Rep_512_c_43 Rep_512_c_43_57 77105 78757 + 8.A.46.1.1
pfam Rep_512_c_43 Rep_512_c_43_58 78781 79917 + SusE
CAZyme Rep_512_c_43 Rep_512_c_43_59 80000 82369 + GH13
CAZyme Rep_512_c_43 Rep_512_c_43_60 82445 84442 + GH13_14
CAZyme Rep_512_c_43 Rep_512_c_43_61 84560 86713 + GH133
Gene ID: Rep_512_c_43_52
Type: TC
Location: 66376 - 67740 (-)
Gene ID: Rep_512_c_43_53
Type: pfam
Location: 67795 - 69390 (-)
Gene ID: Rep_512_c_43_54
Type: CAZyme
Location: 69629 - 71479 (+)
Gene ID: Rep_512_c_43_55
Type: CAZyme
Location: 71667 - 73847 (+)
Gene ID: Rep_512_c_43_56
Type: TC
Location: 74030 - 77092 (+)
Gene ID: Rep_512_c_43_57
Type: TC
Location: 77105 - 78757 (+)
Gene ID: Rep_512_c_43_58
Type: pfam
Location: 78781 - 79917 (+)
Gene ID: Rep_512_c_43_59
Type: CAZyme
Location: 80000 - 82369 (+)
Gene ID: Rep_512_c_43_60
Type: CAZyme
Location: 82445 - 84442 (+)
Gene ID: Rep_512_c_43_61
Type: CAZyme
Location: 84560 - 86713 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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