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Cluster: Rep_512_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_512_c_162 Rep_512_c_162_20 20313 21350 - 1.A.35.3.2
CAZyme Rep_512_c_162 Rep_512_c_162_21 21591 24113 + PL15
CAZyme Rep_512_c_162 Rep_512_c_162_22 24122 25375 + GH88
TC Rep_512_c_162 Rep_512_c_162_23 25470 28637 + 1.B.14.6.1
TC Rep_512_c_162 Rep_512_c_162_24 28649 30331 + 8.A.46.1.3
TC Rep_512_c_162 Rep_512_c_162_25 30411 31124 + 9.B.171.1.2
pfam Rep_512_c_162 Rep_512_c_162_26 31147 32184 + DUF6562
pfam Rep_512_c_162 Rep_512_c_162_27 32230 33819 + DUF6562
CAZyme Rep_512_c_162 Rep_512_c_162_28 34002 36545 + PL15
CAZyme Rep_512_c_162 Rep_512_c_162_29 36624 38036 - GH29
CAZyme Rep_512_c_162 Rep_512_c_162_30 38070 40601 - PL15
Gene ID: Rep_512_c_162_20
Type: TC
Location: 20313 - 21350 (-)
Gene ID: Rep_512_c_162_21
Type: CAZyme
Location: 21591 - 24113 (+)
Gene ID: Rep_512_c_162_22
Type: CAZyme
Location: 24122 - 25375 (+)
Gene ID: Rep_512_c_162_23
Type: TC
Location: 25470 - 28637 (+)
Gene ID: Rep_512_c_162_24
Type: TC
Location: 28649 - 30331 (+)
Gene ID: Rep_512_c_162_25
Type: TC
Location: 30411 - 31124 (+)
Gene ID: Rep_512_c_162_26
Type: pfam
Location: 31147 - 32184 (+)
Gene ID: Rep_512_c_162_27
Type: pfam
Location: 32230 - 33819 (+)
Gene ID: Rep_512_c_162_28
Type: CAZyme
Location: 34002 - 36545 (+)
Gene ID: Rep_512_c_162_29
Type: CAZyme
Location: 36624 - 38036 (-)
Gene ID: Rep_512_c_162_30
Type: CAZyme
Location: 38070 - 40601 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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