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Cluster: Rep_512_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_512_c_94 Rep_512_c_94_20 28515 29903 - GH28
CAZyme Rep_512_c_94 Rep_512_c_94_21 29926 32661 - PL40
pfam Rep_512_c_94 Rep_512_c_94_22 32875 34977 - CotH
pfam Rep_512_c_94 Rep_512_c_94_23 35026 36684 - BACON | Laminin_G_3 | BACON_2
CAZyme Rep_512_c_94 Rep_512_c_94_24 36780 38501 - GH18
pfam Rep_512_c_94 Rep_512_c_94_25 38555 39814 - BT_3987-like_N | Laminin_G_3
pfam Rep_512_c_94 Rep_512_c_94_26 39873 40877 - GH18_BT1044-like
TC Rep_512_c_94 Rep_512_c_94_27 40904 42514 - 8.A.46.2.2
TC Rep_512_c_94 Rep_512_c_94_28 42526 45888 - 1.B.14.6.13
Gene ID: Rep_512_c_94_20
Type: CAZyme
Location: 28515 - 29903 (-)
Gene ID: Rep_512_c_94_21
Type: CAZyme
Location: 29926 - 32661 (-)
Gene ID: Rep_512_c_94_22
Type: pfam
Location: 32875 - 34977 (-)
Gene ID: Rep_512_c_94_23
Type: pfam
Location: 35026 - 36684 (-)
Gene ID: Rep_512_c_94_24
Type: CAZyme
Location: 36780 - 38501 (-)
Gene ID: Rep_512_c_94_25
Type: pfam
Location: 38555 - 39814 (-)
Gene ID: Rep_512_c_94_26
Type: pfam
Location: 39873 - 40877 (-)
Gene ID: Rep_512_c_94_27
Type: TC
Location: 40904 - 42514 (-)
Gene ID: Rep_512_c_94_28
Type: TC
Location: 42526 - 45888 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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