Cluster: Rep_512_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_512
- CGC Family ID: CGCFAM_00061
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_512_c_57 | Rep_512_c_57_10 | 8123 | 10045 | - | GH146 |
| peptidase | Rep_512_c_57 | Rep_512_c_57_11 | 10058 | 11134 | - | S12.UPW |
| pfam | Rep_512_c_57 | Rep_512_c_57_12 | 11163 | 13439 | - | Hepar_II_III_C |
| CAZyme | Rep_512_c_57 | Rep_512_c_57_13 | 13710 | 16055 | + | GT2 |
| pfam | Rep_512_c_57 | Rep_512_c_57_14 | 16058 | 17374 | + | SpoIID |
| TC | Rep_512_c_57 | Rep_512_c_57_15 | 17522 | 18784 | + | 2.A.1.25.5 |
Gene ID: Rep_512_c_57_10
Type: CAZyme
Location: 8123 - 10045 (-)
Type: CAZyme
Location: 8123 - 10045 (-)
Gene ID: Rep_512_c_57_11
Type: peptidase
Location: 10058 - 11134 (-)
Type: peptidase
Location: 10058 - 11134 (-)
Gene ID: Rep_512_c_57_12
Type: pfam
Location: 11163 - 13439 (-)
Type: pfam
Location: 11163 - 13439 (-)
Gene ID: Rep_512_c_57_13
Type: CAZyme
Location: 13710 - 16055 (+)
Type: CAZyme
Location: 13710 - 16055 (+)
Gene ID: Rep_512_c_57_14
Type: pfam
Location: 16058 - 17374 (+)
Type: pfam
Location: 16058 - 17374 (+)
Gene ID: Rep_512_c_57_15
Type: TC
Location: 17522 - 18784 (+)
Type: TC
Location: 17522 - 18784 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.