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Genome Details

Selected Rep_genome_ID: Rep_476
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→
Species
Bacteroides rodentium
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
CGMR020242 4,079,273 91.84% 0.74% China Asia CGMR
Rep_476 4,382,078 96.6791% 0.789963% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_476_CGC1 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_476_CGC42 CGCFAM_00016 Yes 16 6 host glycan
Rep_476_CGC29 CGCFAM_00017 Yes 7 3 fructan
Rep_476_CGC14 CGCFAM_00023 Yes 7 2
Rep_476_CGC47 CGCFAM_00023 Yes 5 3
Rep_476_CGC4 CGCFAM_00043 Yes 6 3 alpha-glucan
Rep_476_CGC31 CGCFAM_00044 Yes 16 6 beta-mannan/xylan/beta-glucan
Rep_476_CGC33 CGCFAM_00082 Yes 7 3 beta-mannan
Rep_476_CGC27 CGCFAM_00095 Yes 6 2
Rep_476_CGC2 CGCFAM_00147 Yes 5 3
Rep_476_CGC51 CGCFAM_00152 Yes 10 4
Rep_476_CGC25 CGCFAM_00170 Yes 4 2
Rep_476_CGC34 CGCFAM_00274 Yes 5 2
Rep_476_CGC3 CGCFAM_00275 Yes 11 5
Rep_476_CGC38 CGCFAM_00297 Yes 6 1
Rep_476_CGC28 CGCFAM_00316 Yes 8 2
Rep_476_CGC43 CGCFAM_00372 Yes 11 4
Rep_476_CGC55 CGCFAM_00478 Yes 5 1
Rep_476_CGC59 CGCFAM_00525 Yes 5 2
Rep_476_CGC63 CGCFAM_00656 Yes 11 4
Rep_476_CGC67 CGCFAM_00934 Yes 11 6 beta-glucan
Rep_476_CGC21 CGCFAM_00937 Yes 20 5
Rep_476_CGC57 CGCFAM_01079 Yes 14 10 beta-glucan
Rep_476_CGC16 CGCFAM_01176 Yes 11 7
Rep_476_CGC36 CGCFAM_01503 Yes 12 9
Top CAZyme Families