Cluster: Rep_476_CGC21
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_00937
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_476_c_64 | Rep_476_c_64_8 | 6321 | 8900 | - | GH13_10 |
| pfam | Rep_476_c_64 | Rep_476_c_64_9 | 9526 | 10956 | - | SusF_SusE | SusF_N |
| pfam | Rep_476_c_64 | Rep_476_c_64_10 | 10981 | 12177 | - | SusE | SusF_SusE |
| TC | Rep_476_c_64 | Rep_476_c_64_11 | 12197 | 13798 | - | 8.A.46.1.1 |
| TC | Rep_476_c_64 | Rep_476_c_64_12 | 13821 | 16883 | - | 1.B.14.6.1 |
| pfam | Rep_476_c_64 | Rep_476_c_64_13 | 17162 | 18886 | - | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | Rep_476_c_64 | Rep_476_c_64_14 | 18967 | 21441 | - | GH2 |
| CAZyme | Rep_476_c_64 | Rep_476_c_64_15 | 21470 | 22645 | - | GH53 |
| CAZyme | Rep_476_c_64 | Rep_476_c_64_16 | 22723 | 23832 | - | GH53 |
| pfam | Rep_476_c_64 | Rep_476_c_64_17 | 23861 | 25030 | - | SusE |
| TC | Rep_476_c_64 | Rep_476_c_64_18 | 25048 | 26661 | - | 8.A.46.1.1 |
| TC | Rep_476_c_64 | Rep_476_c_64_19 | 26683 | 29751 | - | 1.B.14.6.1 |
| TF | Rep_476_c_64 | Rep_476_c_64_20 | 29984 | 33931 | - | HTH_AraC | HTH_AraC |
| TF | Rep_476_c_64 | Rep_476_c_64_21 | 34100 | 35104 | + | LacI |
| TC | Rep_476_c_64 | Rep_476_c_64_22 | 35124 | 36497 | + | 2.A.2.6.2 |
| CAZyme | Rep_476_c_64 | Rep_476_c_64_23 | 36719 | 39037 | + | GH65 |
| pfam | Rep_476_c_64 | Rep_476_c_64_24 | 39188 | 40240 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | Rep_476_c_64 | Rep_476_c_64_25 | 40286 | 43312 | + | 2.A.6.2.37 |
| pfam | Rep_476_c_64 | Rep_476_c_64_26 | 43413 | 44639 | + | OEP | OEP |
| TC | Rep_476_c_64 | Rep_476_c_64_27 | 44727 | 45962 | - | 3.B.1.1.5 |
Gene ID: Rep_476_c_64_8
Type: CAZyme
Location: 6321 - 8900 (-)
Type: CAZyme
Location: 6321 - 8900 (-)
Gene ID: Rep_476_c_64_9
Type: pfam
Location: 9526 - 10956 (-)
Type: pfam
Location: 9526 - 10956 (-)
Gene ID: Rep_476_c_64_10
Type: pfam
Location: 10981 - 12177 (-)
Type: pfam
Location: 10981 - 12177 (-)
Gene ID: Rep_476_c_64_11
Type: TC
Location: 12197 - 13798 (-)
Type: TC
Location: 12197 - 13798 (-)
Gene ID: Rep_476_c_64_12
Type: TC
Location: 13821 - 16883 (-)
Type: TC
Location: 13821 - 16883 (-)
Gene ID: Rep_476_c_64_13
Type: pfam
Location: 17162 - 18886 (-)
Type: pfam
Location: 17162 - 18886 (-)
Gene ID: Rep_476_c_64_14
Type: CAZyme
Location: 18967 - 21441 (-)
Type: CAZyme
Location: 18967 - 21441 (-)
Gene ID: Rep_476_c_64_15
Type: CAZyme
Location: 21470 - 22645 (-)
Type: CAZyme
Location: 21470 - 22645 (-)
Gene ID: Rep_476_c_64_16
Type: CAZyme
Location: 22723 - 23832 (-)
Type: CAZyme
Location: 22723 - 23832 (-)
Gene ID: Rep_476_c_64_17
Type: pfam
Location: 23861 - 25030 (-)
Type: pfam
Location: 23861 - 25030 (-)
Gene ID: Rep_476_c_64_18
Type: TC
Location: 25048 - 26661 (-)
Type: TC
Location: 25048 - 26661 (-)
Gene ID: Rep_476_c_64_19
Type: TC
Location: 26683 - 29751 (-)
Type: TC
Location: 26683 - 29751 (-)
Gene ID: Rep_476_c_64_20
Type: TF
Location: 29984 - 33931 (-)
Type: TF
Location: 29984 - 33931 (-)
Gene ID: Rep_476_c_64_21
Type: TF
Location: 34100 - 35104 (+)
Type: TF
Location: 34100 - 35104 (+)
Gene ID: Rep_476_c_64_22
Type: TC
Location: 35124 - 36497 (+)
Type: TC
Location: 35124 - 36497 (+)
Gene ID: Rep_476_c_64_23
Type: CAZyme
Location: 36719 - 39037 (+)
Type: CAZyme
Location: 36719 - 39037 (+)
Gene ID: Rep_476_c_64_24
Type: pfam
Location: 39188 - 40240 (+)
Type: pfam
Location: 39188 - 40240 (+)
Gene ID: Rep_476_c_64_25
Type: TC
Location: 40286 - 43312 (+)
Type: TC
Location: 40286 - 43312 (+)
Gene ID: Rep_476_c_64_26
Type: pfam
Location: 43413 - 44639 (+)
Type: pfam
Location: 43413 - 44639 (+)
Gene ID: Rep_476_c_64_27
Type: TC
Location: 44727 - 45962 (-)
Type: TC
Location: 44727 - 45962 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.