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Cluster: Rep_476_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_476_c_146 Rep_476_c_146_24 36152 37417 - GH88
TF Rep_476_c_146 Rep_476_c_146_25 37588 41634 - HTH_AraC
CAZyme Rep_476_c_146 Rep_476_c_146_26 41738 43141 - GH29
TC Rep_476_c_146 Rep_476_c_146_27 43370 44785 - 8.A.46.1.3
NULL(UNKNOWN) Rep_476_c_146 Rep_476_c_146_28 44832 45044 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_476_c_146 Rep_476_c_146_29 45076 48279 - 1.B.14.6.1
CAZyme Rep_476_c_146 Rep_476_c_146_30 48459 50966 - PL15
pfam Rep_476_c_146 Rep_476_c_146_31 51102 52580 - DUF6562
CAZyme Rep_476_c_146 Rep_476_c_146_32 52595 55195 - PL15_2
sulfatase Rep_476_c_146 Rep_476_c_146_33 55356 56768 - S1_9
TC Rep_476_c_146 Rep_476_c_146_34 56957 59146 + 3.A.7.7.1
Gene ID: Rep_476_c_146_24
Type: CAZyme
Location: 36152 - 37417 (-)
Gene ID: Rep_476_c_146_25
Type: TF
Location: 37588 - 41634 (-)
Gene ID: Rep_476_c_146_26
Type: CAZyme
Location: 41738 - 43141 (-)
Gene ID: Rep_476_c_146_27
Type: TC
Location: 43370 - 44785 (-)
Gene ID: Rep_476_c_146_28
Type:
Location: 44832 - 45044 (-)
Gene ID: Rep_476_c_146_29
Type: TC
Location: 45076 - 48279 (-)
Gene ID: Rep_476_c_146_30
Type: CAZyme
Location: 48459 - 50966 (-)
Gene ID: Rep_476_c_146_31
Type: pfam
Location: 51102 - 52580 (-)
Gene ID: Rep_476_c_146_32
Type: CAZyme
Location: 52595 - 55195 (-)
Gene ID: Rep_476_c_146_33
Type: sulfatase
Location: 55356 - 56768 (-)
Gene ID: Rep_476_c_146_34
Type: TC
Location: 56957 - 59146 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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