Cluster: Rep_476_CGC31
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_00044
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_476_c_102 | Rep_476_c_102_40 | 34348 | 36327 | - | GH67 |
| CAZyme | Rep_476_c_102 | Rep_476_c_102_41 | 36328 | 37308 | - | GH43_1 |
| CAZyme | Rep_476_c_102 | Rep_476_c_102_42 | 37334 | 38479 | - | GH10 |
| TC | Rep_476_c_102 | Rep_476_c_102_43 | 38543 | 39961 | - | 2.A.2.3.2 |
| CAZyme | Rep_476_c_102 | Rep_476_c_102_44 | 39973 | 41631 | - | CE20 | CE20 |
| CAZyme | Rep_476_c_102 | Rep_476_c_102_45 | 41728 | 43491 | - | GH35 |
| CAZyme | Rep_476_c_102 | Rep_476_c_102_46 | 43738 | 46023 | - | GH10 |
| pfam | Rep_476_c_102 | Rep_476_c_102_47 | 46045 | 47475 | - | SGBP_B_XBD |
| pfam | Rep_476_c_102 | Rep_476_c_102_48 | 47493 | 49205 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_476_c_102 | Rep_476_c_102_49 | 49225 | 52398 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_476_c_102 | Rep_476_c_102_50 | 53005 | 53142 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_476_c_102 | Rep_476_c_102_51 | 53223 | 57305 | + | HTH_AraC |
| TC | Rep_476_c_102 | Rep_476_c_102_52 | 57428 | 60427 | - | 2.A.6.4.3 |
| peptidase | Rep_476_c_102 | Rep_476_c_102_53 | 60511 | 62595 | - | M03.UPA |
| pfam | Rep_476_c_102 | Rep_476_c_102_54 | 62631 | 63731 | - | Exo_endo_phos |
| TC | Rep_476_c_102 | Rep_476_c_102_55 | 63824 | 64714 | - | 9.B.104.1.2 |
Gene ID: Rep_476_c_102_40
Type: CAZyme
Location: 34348 - 36327 (-)
Type: CAZyme
Location: 34348 - 36327 (-)
Gene ID: Rep_476_c_102_41
Type: CAZyme
Location: 36328 - 37308 (-)
Type: CAZyme
Location: 36328 - 37308 (-)
Gene ID: Rep_476_c_102_42
Type: CAZyme
Location: 37334 - 38479 (-)
Type: CAZyme
Location: 37334 - 38479 (-)
Gene ID: Rep_476_c_102_43
Type: TC
Location: 38543 - 39961 (-)
Type: TC
Location: 38543 - 39961 (-)
Gene ID: Rep_476_c_102_44
Type: CAZyme
Location: 39973 - 41631 (-)
Type: CAZyme
Location: 39973 - 41631 (-)
Gene ID: Rep_476_c_102_45
Type: CAZyme
Location: 41728 - 43491 (-)
Type: CAZyme
Location: 41728 - 43491 (-)
Gene ID: Rep_476_c_102_46
Type: CAZyme
Location: 43738 - 46023 (-)
Type: CAZyme
Location: 43738 - 46023 (-)
Gene ID: Rep_476_c_102_47
Type: pfam
Location: 46045 - 47475 (-)
Type: pfam
Location: 46045 - 47475 (-)
Gene ID: Rep_476_c_102_48
Type: pfam
Location: 47493 - 49205 (-)
Type: pfam
Location: 47493 - 49205 (-)
Gene ID: Rep_476_c_102_49
Type: TC
Location: 49225 - 52398 (-)
Type: TC
Location: 49225 - 52398 (-)
Gene ID: Rep_476_c_102_50
Type:
Location: 53005 - 53142 (+)
Type:
Location: 53005 - 53142 (+)
Gene ID: Rep_476_c_102_51
Type: TF
Location: 53223 - 57305 (+)
Type: TF
Location: 53223 - 57305 (+)
Gene ID: Rep_476_c_102_52
Type: TC
Location: 57428 - 60427 (-)
Type: TC
Location: 57428 - 60427 (-)
Gene ID: Rep_476_c_102_53
Type: peptidase
Location: 60511 - 62595 (-)
Type: peptidase
Location: 60511 - 62595 (-)
Gene ID: Rep_476_c_102_54
Type: pfam
Location: 62631 - 63731 (-)
Type: pfam
Location: 62631 - 63731 (-)
Gene ID: Rep_476_c_102_55
Type: TC
Location: 63824 - 64714 (-)
Type: TC
Location: 63824 - 64714 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.