Cluster: Rep_476_CGC51
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_00152
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_476_c_179 | Rep_476_c_179_26 | 31946 | 34267 | - | GH20 |
| CAZyme | Rep_476_c_179 | Rep_476_c_179_27 | 34264 | 35715 | - | GH125 |
| CAZyme | Rep_476_c_179 | Rep_476_c_179_28 | 35730 | 37334 | - | GH63 |
| pfam | Rep_476_c_179 | Rep_476_c_179_29 | 37354 | 38496 | - | Alk_phosphatase | Metalloenzyme |
| sulfatase | Rep_476_c_179 | Rep_476_c_179_30 | 38608 | 39477 | - | S1_14 |
| CAZyme | Rep_476_c_179 | Rep_476_c_179_31 | 39495 | 42425 | - | GH92 |
| NULL(UNKNOWN) | Rep_476_c_179 | Rep_476_c_179_32 | 42651 | 43460 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_476_c_179 | Rep_476_c_179_33 | 43473 | 44294 | - | Exo_endo_phos |
| TC | Rep_476_c_179 | Rep_476_c_179_34 | 44315 | 45904 | - | 8.A.46.1.3 |
| TC | Rep_476_c_179 | Rep_476_c_179_35 | 45938 | 49102 | - | 1.B.14.6.1 |
Gene ID: Rep_476_c_179_26
Type: CAZyme
Location: 31946 - 34267 (-)
Type: CAZyme
Location: 31946 - 34267 (-)
Gene ID: Rep_476_c_179_27
Type: CAZyme
Location: 34264 - 35715 (-)
Type: CAZyme
Location: 34264 - 35715 (-)
Gene ID: Rep_476_c_179_28
Type: CAZyme
Location: 35730 - 37334 (-)
Type: CAZyme
Location: 35730 - 37334 (-)
Gene ID: Rep_476_c_179_29
Type: pfam
Location: 37354 - 38496 (-)
Type: pfam
Location: 37354 - 38496 (-)
Gene ID: Rep_476_c_179_30
Type: sulfatase
Location: 38608 - 39477 (-)
Type: sulfatase
Location: 38608 - 39477 (-)
Gene ID: Rep_476_c_179_31
Type: CAZyme
Location: 39495 - 42425 (-)
Type: CAZyme
Location: 39495 - 42425 (-)
Gene ID: Rep_476_c_179_32
Type:
Location: 42651 - 43460 (-)
Type:
Location: 42651 - 43460 (-)
Gene ID: Rep_476_c_179_33
Type: pfam
Location: 43473 - 44294 (-)
Type: pfam
Location: 43473 - 44294 (-)
Gene ID: Rep_476_c_179_34
Type: TC
Location: 44315 - 45904 (-)
Type: TC
Location: 44315 - 45904 (-)
Gene ID: Rep_476_c_179_35
Type: TC
Location: 45938 - 49102 (-)
Type: TC
Location: 45938 - 49102 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.