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Cluster: Rep_476_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_476_c_92 Rep_476_c_92_4 1759 3513 + 3.A.2.3.3
TC Rep_476_c_92 Rep_476_c_92_5 3654 4985 + 3.A.2.3.3
pfam Rep_476_c_92 Rep_476_c_92_6 5018 5371 + 23S_rRNA_IVP
pfam Rep_476_c_92 Rep_476_c_92_7 5400 6002 + ATP-synt_D
TC Rep_476_c_92 Rep_476_c_92_8 5999 7825 + 3.A.2.3.3
pfam Rep_476_c_92 Rep_476_c_92_9 7859 8278 + ATP-synt_C | ATP-synt_C
CAZyme Rep_476_c_92 Rep_476_c_92_10 8574 10235 + GT3
CAZyme Rep_476_c_92 Rep_476_c_92_11 10266 12830 + GT35
Gene ID: Rep_476_c_92_4
Type: TC
Location: 1759 - 3513 (+)
Gene ID: Rep_476_c_92_5
Type: TC
Location: 3654 - 4985 (+)
Gene ID: Rep_476_c_92_6
Type: pfam
Location: 5018 - 5371 (+)
Gene ID: Rep_476_c_92_7
Type: pfam
Location: 5400 - 6002 (+)
Gene ID: Rep_476_c_92_8
Type: TC
Location: 5999 - 7825 (+)
Gene ID: Rep_476_c_92_9
Type: pfam
Location: 7859 - 8278 (+)
Gene ID: Rep_476_c_92_10
Type: CAZyme
Location: 8574 - 10235 (+)
Gene ID: Rep_476_c_92_11
Type: CAZyme
Location: 10266 - 12830 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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