Cluster: Rep_476_CGC57
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 10
- Substrate: beta-glucan
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_01079
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_476_c_188 | Rep_476_c_188_26 | 36214 | 38211 | - | GH2 |
| TF | Rep_476_c_188 | Rep_476_c_188_27 | 38577 | 42602 | + | HTH_AraC |
| TC | Rep_476_c_188 | Rep_476_c_188_28 | 42723 | 45899 | + | 1.B.14.6.1 |
| pfam | Rep_476_c_188 | Rep_476_c_188_29 | 45941 | 47563 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_476_c_188 | Rep_476_c_188_30 | 47599 | 49056 | + | TIG | SGBP_B_XBD |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_31 | 49255 | 50703 | + | GH5_4 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_32 | 50734 | 52806 | + | GH97 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_33 | 52803 | 56540 | + | GH2 | GH2 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_34 | 56578 | 58638 | + | GH42 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_35 | 58650 | 61757 | + | GH2 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_36 | 61811 | 63427 | + | GH29 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_37 | 63442 | 65832 | + | GH31_4 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_38 | 65882 | 68725 | + | CE20 | GH43_16 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_39 | 68722 | 72378 | + | GH2 |
Gene ID: Rep_476_c_188_26
Type: CAZyme
Location: 36214 - 38211 (-)
Type: CAZyme
Location: 36214 - 38211 (-)
Gene ID: Rep_476_c_188_27
Type: TF
Location: 38577 - 42602 (+)
Type: TF
Location: 38577 - 42602 (+)
Gene ID: Rep_476_c_188_28
Type: TC
Location: 42723 - 45899 (+)
Type: TC
Location: 42723 - 45899 (+)
Gene ID: Rep_476_c_188_29
Type: pfam
Location: 45941 - 47563 (+)
Type: pfam
Location: 45941 - 47563 (+)
Gene ID: Rep_476_c_188_30
Type: pfam
Location: 47599 - 49056 (+)
Type: pfam
Location: 47599 - 49056 (+)
Gene ID: Rep_476_c_188_31
Type: CAZyme
Location: 49255 - 50703 (+)
Type: CAZyme
Location: 49255 - 50703 (+)
Gene ID: Rep_476_c_188_32
Type: CAZyme
Location: 50734 - 52806 (+)
Type: CAZyme
Location: 50734 - 52806 (+)
Gene ID: Rep_476_c_188_33
Type: CAZyme
Location: 52803 - 56540 (+)
Type: CAZyme
Location: 52803 - 56540 (+)
Gene ID: Rep_476_c_188_34
Type: CAZyme
Location: 56578 - 58638 (+)
Type: CAZyme
Location: 56578 - 58638 (+)
Gene ID: Rep_476_c_188_35
Type: CAZyme
Location: 58650 - 61757 (+)
Type: CAZyme
Location: 58650 - 61757 (+)
Gene ID: Rep_476_c_188_36
Type: CAZyme
Location: 61811 - 63427 (+)
Type: CAZyme
Location: 61811 - 63427 (+)
Gene ID: Rep_476_c_188_37
Type: CAZyme
Location: 63442 - 65832 (+)
Type: CAZyme
Location: 63442 - 65832 (+)
Gene ID: Rep_476_c_188_38
Type: CAZyme
Location: 65882 - 68725 (+)
Type: CAZyme
Location: 65882 - 68725 (+)
Gene ID: Rep_476_c_188_39
Type: CAZyme
Location: 68722 - 72378 (+)
Type: CAZyme
Location: 68722 - 72378 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.