Cluster: Rep_476_CGC33
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: beta-mannan
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_00082
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_476_c_107 | Rep_476_c_107_9 | 6477 | 9071 | - | GH3 |
| CAZyme | Rep_476_c_107 | Rep_476_c_107_10 | 9232 | 11487 | - | GH3 |
| NULL(UNKNOWN) | Rep_476_c_107 | Rep_476_c_107_11 | 11509 | 12741 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_476_c_107 | Rep_476_c_107_12 | 12790 | 14469 | - | 8.A.46.2.2 |
| TC | Rep_476_c_107 | Rep_476_c_107_13 | 14518 | 17703 | - | 1.B.14.6.2 |
| TF | Rep_476_c_107 | Rep_476_c_107_14 | 17936 | 21877 | + | HTH_AraC |
| CAZyme | Rep_476_c_107 | Rep_476_c_107_15 | 21973 | 23526 | + | GH5_4 |
Gene ID: Rep_476_c_107_9
Type: CAZyme
Location: 6477 - 9071 (-)
Type: CAZyme
Location: 6477 - 9071 (-)
Gene ID: Rep_476_c_107_10
Type: CAZyme
Location: 9232 - 11487 (-)
Type: CAZyme
Location: 9232 - 11487 (-)
Gene ID: Rep_476_c_107_11
Type:
Location: 11509 - 12741 (-)
Type:
Location: 11509 - 12741 (-)
Gene ID: Rep_476_c_107_12
Type: TC
Location: 12790 - 14469 (-)
Type: TC
Location: 12790 - 14469 (-)
Gene ID: Rep_476_c_107_13
Type: TC
Location: 14518 - 17703 (-)
Type: TC
Location: 14518 - 17703 (-)
Gene ID: Rep_476_c_107_14
Type: TF
Location: 17936 - 21877 (+)
Type: TF
Location: 17936 - 21877 (+)
Gene ID: Rep_476_c_107_15
Type: CAZyme
Location: 21973 - 23526 (+)
Type: CAZyme
Location: 21973 - 23526 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_476_c_107_10 | vegetarian > omnivore | 1.60378 | 0.02785 |
| Rep_476_c_107_11 | vegetarian > omnivore | 1.52682 | 0.03875 |
| Rep_476_c_107_12 | vegetarian > omnivore | 1.23236 | 0.04109 |
| Rep_476_c_107_13 | vegetarian > omnivore | 1.08576 | 0.03920 |