Cluster: Rep_476_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_00023
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_476_c_53 | Rep_476_c_53_7 | 12079 | 15129 | + | 1.B.14.6.1 |
| TC | Rep_476_c_53 | Rep_476_c_53_8 | 15143 | 16804 | + | 8.A.46.1.3 |
| CAZyme | Rep_476_c_53 | Rep_476_c_53_9 | 16924 | 18531 | + | GH30_4 |
| CAZyme | Rep_476_c_53 | Rep_476_c_53_10 | 18567 | 21008 | + | GH2 |
| TF | Rep_476_c_53 | Rep_476_c_53_11 | 21151 | 22575 | + | 0040266 |
| NULL(UNKNOWN) | Rep_476_c_53 | Rep_476_c_53_12 | 22580 | 23053 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_476_c_53 | Rep_476_c_53_13 | 23076 | 25241 | - | 3.A.1.112.9 |
Gene ID: Rep_476_c_53_7
Type: TC
Location: 12079 - 15129 (+)
Type: TC
Location: 12079 - 15129 (+)
Gene ID: Rep_476_c_53_8
Type: TC
Location: 15143 - 16804 (+)
Type: TC
Location: 15143 - 16804 (+)
Gene ID: Rep_476_c_53_9
Type: CAZyme
Location: 16924 - 18531 (+)
Type: CAZyme
Location: 16924 - 18531 (+)
Gene ID: Rep_476_c_53_10
Type: CAZyme
Location: 18567 - 21008 (+)
Type: CAZyme
Location: 18567 - 21008 (+)
Gene ID: Rep_476_c_53_11
Type: TF
Location: 21151 - 22575 (+)
Type: TF
Location: 21151 - 22575 (+)
Gene ID: Rep_476_c_53_12
Type:
Location: 22580 - 23053 (-)
Type:
Location: 22580 - 23053 (-)
Gene ID: Rep_476_c_53_13
Type: TC
Location: 23076 - 25241 (-)
Type: TC
Location: 23076 - 25241 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.