Cluster: Rep_476_CGC55
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_00478
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_476_c_186 | Rep_476_c_186_23 | 30500 | 33727 | - | 1.B.14.6.1 |
| STP | Rep_476_c_186 | Rep_476_c_186_24 | 33774 | 34289 | - | Sigma70_r2 | Sigma70_r4_2 |
| TF | Rep_476_c_186 | Rep_476_c_186_25 | 34493 | 37291 | - | HTH_AraC |
| CAZyme | Rep_476_c_186 | Rep_476_c_186_26 | 37384 | 40131 | - | PL40 |
| TC | Rep_476_c_186 | Rep_476_c_186_27 | 40212 | 42071 | - | 2.A.47.4.8 |
Gene ID: Rep_476_c_186_23
Type: TC
Location: 30500 - 33727 (-)
Type: TC
Location: 30500 - 33727 (-)
Gene ID: Rep_476_c_186_24
Type: STP
Location: 33774 - 34289 (-)
Type: STP
Location: 33774 - 34289 (-)
Gene ID: Rep_476_c_186_25
Type: TF
Location: 34493 - 37291 (-)
Type: TF
Location: 34493 - 37291 (-)
Gene ID: Rep_476_c_186_26
Type: CAZyme
Location: 37384 - 40131 (-)
Type: CAZyme
Location: 37384 - 40131 (-)
Gene ID: Rep_476_c_186_27
Type: TC
Location: 40212 - 42071 (-)
Type: TC
Location: 40212 - 42071 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.