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Cluster: Rep_476_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_476_c_11 Rep_476_c_11_13 10585 11919 - GH144
CAZyme Rep_476_c_11 Rep_476_c_11_14 11945 14287 - GH3
TC Rep_476_c_11 Rep_476_c_11_15 14585 16105 - 8.A.46.1.3
TC Rep_476_c_11 Rep_476_c_11_16 16189 19224 - 1.B.14.6.1
NULL(UNKNOWN) Rep_476_c_11 Rep_476_c_11_17 19490 19732 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_476_c_11 Rep_476_c_11_18 19713 20147 + PIN
CAZyme Rep_476_c_11 Rep_476_c_11_19 20243 22534 - GH3
CAZyme Rep_476_c_11 Rep_476_c_11_20 22548 23951 - GH144
CAZyme Rep_476_c_11 Rep_476_c_11_21 23970 26069 - CBM32 | GH43_28
pfam Rep_476_c_11 Rep_476_c_11_22 26079 27629 - SusD_RagB | SusD-like_3
TC Rep_476_c_11 Rep_476_c_11_23 27648 30671 - 1.B.14.6.1
Gene ID: Rep_476_c_11_13
Type: CAZyme
Location: 10585 - 11919 (-)
Gene ID: Rep_476_c_11_14
Type: CAZyme
Location: 11945 - 14287 (-)
Gene ID: Rep_476_c_11_15
Type: TC
Location: 14585 - 16105 (-)
Gene ID: Rep_476_c_11_16
Type: TC
Location: 16189 - 19224 (-)
Gene ID: Rep_476_c_11_17
Type:
Location: 19490 - 19732 (+)
Gene ID: Rep_476_c_11_18
Type: pfam
Location: 19713 - 20147 (+)
Gene ID: Rep_476_c_11_19
Type: CAZyme
Location: 20243 - 22534 (-)
Gene ID: Rep_476_c_11_20
Type: CAZyme
Location: 22548 - 23951 (-)
Gene ID: Rep_476_c_11_21
Type: CAZyme
Location: 23970 - 26069 (-)
Gene ID: Rep_476_c_11_22
Type: pfam
Location: 26079 - 27629 (-)
Gene ID: Rep_476_c_11_23
Type: TC
Location: 27648 - 30671 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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