Cluster: Rep_476_CGC42
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate: host glycan
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_00016
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_476_c_146 | Rep_476_c_146_2 | 2360 | 4591 | + | GH92 |
| TF | Rep_476_c_146 | Rep_476_c_146_3 | 4603 | 5196 | + | GerE |
| STP | Rep_476_c_146 | Rep_476_c_146_4 | 5208 | 6197 | + | FecR |
| CAZyme | Rep_476_c_146 | Rep_476_c_146_5 | 6263 | 8539 | + | GH92 |
| TC | Rep_476_c_146 | Rep_476_c_146_6 | 8842 | 12171 | + | 1.B.14.6.13 |
| TC | Rep_476_c_146 | Rep_476_c_146_7 | 12184 | 13803 | + | 8.A.46.2.2 |
| pfam | Rep_476_c_146 | Rep_476_c_146_8 | 13841 | 14848 | + | GH18_BT1044-like |
| pfam | Rep_476_c_146 | Rep_476_c_146_9 | 14859 | 16007 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | Rep_476_c_146 | Rep_476_c_146_10 | 16044 | 18017 | + | GH18 |
| CAZyme | Rep_476_c_146 | Rep_476_c_146_11 | 18184 | 20454 | + | GH92 |
| pfam | Rep_476_c_146 | Rep_476_c_146_12 | 20476 | 21786 | + | MFS_1 | MFS_1 |
| CAZyme | Rep_476_c_146 | Rep_476_c_146_13 | 21810 | 22781 | + | GH130_2 |
| CAZyme | Rep_476_c_146 | Rep_476_c_146_14 | 23077 | 25320 | + | GH92 |
| peptidase | Rep_476_c_146 | Rep_476_c_146_15 | 25431 | 26315 | - | G04.UNW |
| peptidase | Rep_476_c_146 | Rep_476_c_146_16 | 26370 | 26885 | - | C40.004 |
| TC | Rep_476_c_146 | Rep_476_c_146_17 | 26882 | 27676 | - | 3.A.1.128.6 |
Gene ID: Rep_476_c_146_2
Type: CAZyme
Location: 2360 - 4591 (+)
Type: CAZyme
Location: 2360 - 4591 (+)
Gene ID: Rep_476_c_146_3
Type: TF
Location: 4603 - 5196 (+)
Type: TF
Location: 4603 - 5196 (+)
Gene ID: Rep_476_c_146_4
Type: STP
Location: 5208 - 6197 (+)
Type: STP
Location: 5208 - 6197 (+)
Gene ID: Rep_476_c_146_5
Type: CAZyme
Location: 6263 - 8539 (+)
Type: CAZyme
Location: 6263 - 8539 (+)
Gene ID: Rep_476_c_146_6
Type: TC
Location: 8842 - 12171 (+)
Type: TC
Location: 8842 - 12171 (+)
Gene ID: Rep_476_c_146_7
Type: TC
Location: 12184 - 13803 (+)
Type: TC
Location: 12184 - 13803 (+)
Gene ID: Rep_476_c_146_8
Type: pfam
Location: 13841 - 14848 (+)
Type: pfam
Location: 13841 - 14848 (+)
Gene ID: Rep_476_c_146_9
Type: pfam
Location: 14859 - 16007 (+)
Type: pfam
Location: 14859 - 16007 (+)
Gene ID: Rep_476_c_146_10
Type: CAZyme
Location: 16044 - 18017 (+)
Type: CAZyme
Location: 16044 - 18017 (+)
Gene ID: Rep_476_c_146_11
Type: CAZyme
Location: 18184 - 20454 (+)
Type: CAZyme
Location: 18184 - 20454 (+)
Gene ID: Rep_476_c_146_12
Type: pfam
Location: 20476 - 21786 (+)
Type: pfam
Location: 20476 - 21786 (+)
Gene ID: Rep_476_c_146_13
Type: CAZyme
Location: 21810 - 22781 (+)
Type: CAZyme
Location: 21810 - 22781 (+)
Gene ID: Rep_476_c_146_14
Type: CAZyme
Location: 23077 - 25320 (+)
Type: CAZyme
Location: 23077 - 25320 (+)
Gene ID: Rep_476_c_146_15
Type: peptidase
Location: 25431 - 26315 (-)
Type: peptidase
Location: 25431 - 26315 (-)
Gene ID: Rep_476_c_146_16
Type: peptidase
Location: 26370 - 26885 (-)
Type: peptidase
Location: 26370 - 26885 (-)
Gene ID: Rep_476_c_146_17
Type: TC
Location: 26882 - 27676 (-)
Type: TC
Location: 26882 - 27676 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.